PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G275500.1
Common NamePHAVU_008G275500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family GRAS
Protein Properties Length: 539aa    MW: 60871.1 Da    PI: 5.3757
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G275500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4324.7e-1321695382374
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                         +e L +cA av+ +d+e +++l+++l++++s +g+p+qRl ay++eAL arla+s+s++ykal+++e +     e l+ ++l++e++P+lk
  Phvul.008G275500.1 169 KEMLCTCAIAVAGNDMETTEWLMSELRKMVSISGNPIQRLGAYMLEALVARLASSGSTIYKALKCKEPT---GRELLSHMHLLYEICPYLK 256
                         789*****************************************************************9...999999************* PP

                GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvl 181
                         f++l aN  I e +++e+++HiiDf+i+qG+QW++L+qaLa Rp+gpp++RiTg+++++s   ++  le +gerL+ +A++ +vpfef++l
  Phvul.008G275500.1 257 FGYLSANGVIAEVMKEESEIHIIDFQINQGIQWVSLIQALAGRPGGPPKIRITGFDDSTSAyaREGGLEIVGERLSTLAQSYNVPFEFHAL 347
                         *********************************************************998899999************************6 PP

                GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272
                          + + +++e+++L+++pgEa+aVn++++lh+l+desv+++++rd++L++ k lsPk+v +veqe+ +++ +F+ rf+e+++yy a+f+s++
  Phvul.008G275500.1 348 -EVSPTEVEIKDLKLRPGEAIAVNFAMMLHHLPDESVDSQNHRDRLLRMAKCLSPKIVALVEQESHTSNLPFFPRFVETMNYYLAIFESID 437
                         .66788999********************************************************************************** PP

                GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363
                         + lpre++eri+vE+++l+re+vn+vacegaer+erhe l+kWr+r+++aGF+p+pl++++++++k l + ++++ y++ee++g+l lgW+
  Phvul.008G275500.1 438 VALPRENKERINVEQHCLAREVVNLVACEGAERVERHEPLKKWRSRFTMAGFSPYPLNSFITCSIKNLQQSYQGH-YTLEERDGALSLGWM 527
                         *************************************************************************77.*************** PP

                GRAS 364 drpLvsvSaWr 374
                         ++ L++ SaWr
  Phvul.008G275500.1 528 NQVLITSSAWR 538
                         **********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.324142519IPR005202Transcription factor GRAS
PfamPF035141.6E-129169538IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MQMSHKHKMS YEPVQNFGSC CFLQSENQDY YSSSDNSGHA TYPSVRTSEQ YCTLESSTKN  60
SFPSLNSPST ISFSPNNSPV SKLQPKSYVL SSQNSLEIAN DSLENESCLT HNDNELRHKI  120
RELESVMLGH DADILDMYDP VIPEESESFF LEAERWKKMM EVISRGDLKE MLCTCAIAVA  180
GNDMETTEWL MSELRKMVSI SGNPIQRLGA YMLEALVARL ASSGSTIYKA LKCKEPTGRE  240
LLSHMHLLYE ICPYLKFGYL SANGVIAEVM KEESEIHIID FQINQGIQWV SLIQALAGRP  300
GGPPKIRITG FDDSTSAYAR EGGLEIVGER LSTLAQSYNV PFEFHALEVS PTEVEIKDLK  360
LRPGEAIAVN FAMMLHHLPD ESVDSQNHRD RLLRMAKCLS PKIVALVEQE SHTSNLPFFP  420
RFVETMNYYL AIFESIDVAL PRENKERINV EQHCLAREVV NLVACEGAER VERHEPLKKW  480
RSRFTMAGFS PYPLNSFITC SIKNLQQSYQ GHYTLEERDG ALSLGWMNQV LITSSAWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-611725388375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G275500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007142381.10.0hypothetical protein PHAVU_008G275500g
SwissprotQ8H1250.0SCL5_ARATH; Scarecrow-like protein 5
TrEMBLV7B9V90.0V7B9V9_PHAVU; Uncharacterized protein
STRINGXP_007142381.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16533497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.10.0scarecrow-like 5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]