PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G271100.1
Common NamePHAVU_008G271100g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 220aa    MW: 23636.3 Da    PI: 8.7421
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G271100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.41.1e-202777155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        ++y+GVr ++ +gr++AeIrdp +   ++r++lg+f++aeeAa+a++aa+++l+g
  Phvul.008G271100.1 27 PRYRGVRKRP-WGRFAAEIRDPLK---KARVWLGTFDSAEEAARAYDAAARSLRG 77
                        68********.**********743...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.8E-142777IPR001471AP2/ERF domain
CDDcd000184.60E-192785No hitNo description
SMARTSM003802.5E-362891IPR001471AP2/ERF domain
PROSITE profilePS5103224.0652885IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-322886IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-222886IPR016177DNA-binding domain
PRINTSPR003676.8E-112940IPR001471AP2/ERF domain
PRINTSPR003676.8E-115167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MRKGRGGAAS VVTAAAAAAN GSFLKEPRYR GVRKRPWGRF AAEIRDPLKK ARVWLGTFDS  60
AEEAARAYDA AARSLRGPKA KTNFPLTHPF CYPHPTTNPL FYAGFHDNNH HNGSLNNPQR  120
PTSSGMSSTV ESFSGPRPPA AAAATSMTPF LTTTRRYPRT PPLVPEDCHS DCDSSSSVVD  180
DGDNIVSSSF RPPLPFDLNA PPFDDASADD DLRCTALCL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-2128851472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways and could also regulate other AtERFs. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:9756931}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G271100.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), ethylene and Alternaria brassicicola (locally and systemically). Moderate induction by wounding or drought stress does not require EIN2, whereas induction by NaCl does. Transcripts accumulate slightly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by ethylene, exogenous abscisic acid (ABA), cold and heat stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007142329.11e-159hypothetical protein PHAVU_008G271100g
SwissprotO803393e-54ERF82_ARATH; Ethylene-responsive transcription factor 3
TrEMBLV7BBT01e-158V7BBT0_PHAVU; Uncharacterized protein
STRINGXP_007142329.11e-158(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22633484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.11e-27ethylene responsive element binding factor 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]