PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.008G270500.1 | ||||||||
Common Name | PHAVU_008G270500g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | WRKY | ||||||||
Protein Properties | Length: 457aa MW: 50171.3 Da PI: 6.6708 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.2 | 2.3e-30 | 238 | 296 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg+++pr+YYrCt++ Cpv+k+v+r+aed +vv++tYeg+Hnh Phvul.008G270500.1 238 ADGCQWRKYGQKMAKGNPCPRAYYRCTMSsACPVRKQVQRCAEDRSVVITTYEGQHNHA 296 7***************************999***************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.8E-33 | 222 | 298 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.79E-27 | 230 | 298 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.046 | 232 | 298 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.3E-35 | 237 | 297 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.1E-26 | 239 | 295 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 457 aa Download sequence Send to blast |
MEPSSNHAIP HPSSHPLLSF RGTPLHMDAL DFFPQKTKEI QDHDHTHHHQ TLHYHVDTSL 60 DLLTKNTGGN RSMEENEALE TVDEKSRFVA MVSELHQMNA ENQRLRELVD EMNNNCNALR 120 MQLINITQKQ HNQGNNGVSG EKEEMVPRPF LEMGVSEKEE QPSEEKVKVD LMHQCKGSDQ 180 KEIEDKLDCG RESSKARMEA DQQLSTKLSK LDQNSETLSM IKKARVSVRA RSDSTMIADG 240 CQWRKYGQKM AKGNPCPRAY YRCTMSSACP VRKQVQRCAE DRSVVITTYE GQHNHALPPT 300 AQAMAATTSA AASMLLSGSM PSSDGQINPT MLQSASLPCS QNMATLSASA PFPTITLDLT 360 QNPTNQLGLL SPLLARKFMS VPKIFGHSLC DQTKLAGLHE SQGRDSSPSF ANSFNAATAA 420 ITADPNFTAA LVAAITSVMG NSHNNSTGEE HCNNNA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-21 | 224 | 299 | 1 | 75 | WRKY transcription factor 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.008G270500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 1e-107 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007142321.1 | 0.0 | hypothetical protein PHAVU_008G270500g | ||||
TrEMBL | V7B9Q9 | 0.0 | V7B9Q9_PHAVU; Uncharacterized protein | ||||
STRING | XP_007142321.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13913 | 12 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62300.1 | 9e-77 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.008G270500.1 |
Entrez Gene | 18624176 |