PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G262700.1
Common NamePHAVU_008G262700g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB
Protein Properties Length: 370aa    MW: 42783 Da    PI: 7.5886
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G262700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding543.8e-17104150148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g W +eEd +l+++vkq+G + W+ Ia+ +  gR +kqc++rw+++l
  Phvul.008G262700.1 104 KGQWNKEEDRKLIRLVKQHGDRKWAEIAENLE-GRVGKQCRERWNNHL 150
                         799*****************************.*************97 PP
2Myb_DNA-binding41.53e-13156198145
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         +++W++eE+ +lv+ ++ lG++ W   a+++  gR+++ +k++w+
  Phvul.008G262700.1 156 KDSWSEEEERILVEMHASLGNR-WCEMAKRLA-GRSENAIKNHWN 198
                         679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.39599154IPR017930Myb domain
SuperFamilySSF466892.03E-26101197IPR009057Homeodomain-like
SMARTSM007174.3E-16103152IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-27105158IPR009057Homeodomain-like
CDDcd001675.05E-15107150No hitNo description
PfamPF139213.2E-18107164No hitNo description
SMARTSM007175.8E-15155203IPR001005SANT/Myb domain
PROSITE profilePS5129416.12155205IPR017930Myb domain
CDDcd001671.04E-10158201No hitNo description
Gene3DG3DSA:1.10.10.608.1E-19159203IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MSIGESHGGN GFQIYGCDVM NPAFTSTDTN EFLCAHFLHQ KQQQQARNSD DCAFSEGAFS  60
EEAFKWTNIN HNLTLCLEDM QVSCKNTKVV GRRRKKQSSV SWIKGQWNKE EDRKLIRLVK  120
QHGDRKWAEI AENLEGRVGK QCRERWNNHL RPDIKKDSWS EEEERILVEM HASLGNRWCE  180
MAKRLAGRSE NAIKNHWNAT KRRLNSKRKH KKTKNGKPHS SILEDYIRSK TLITTNPTPL  240
IITAPQENAP NPLNHVFHEP FANDLLFMQQ ICMENVDASK HPKMSPTSYL DCWNMNVDDM  300
DESEFLYSQQ FSDNMQLNDS LFPRETHAHP PGNYLPSDLY VSPFGYGNQN LNIDFRHQGC  360
SQVKGEDIW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C4e-411032033103C-Myb DNA-Binding Domain
1msf_C4e-411032033103C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G262700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007142225.10.0hypothetical protein PHAVU_008G262700g
TrEMBLV7B8T70.0V7B8T7_PHAVU; Uncharacterized protein
STRINGXP_007142225.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41293158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11050.11e-62myb domain protein 64