PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.008G253600.1 | ||||||||
Common Name | PHAVU_008G253600g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | AP2 | ||||||||
Protein Properties | Length: 303aa MW: 34412.7 Da PI: 6.1213 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.2 | 3e-16 | 35 | 94 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n k+ ++++lg ++ +e Aa+a++ a++k++g Phvul.008G253600.1 35 SIYRGVTRHRWTGRYEAHLWDkNCWNEsqsKKgRQVYLGAYDDEEAAARAYDLAALKYWG 94 57*******************999977777557*************************98 PP | |||||||
2 | AP2 | 52.7 | 1e-16 | 137 | 189 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa+a++ a+ +++g+ Phvul.008G253600.1 137 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAAAYDMAAIEYRGA 189 89****99**********99966...3.6*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.3E-12 | 35 | 94 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.63E-17 | 35 | 103 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.3E-28 | 36 | 108 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-16 | 36 | 103 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.587 | 36 | 102 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-6 | 37 | 48 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.3E-12 | 137 | 188 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-18 | 137 | 198 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.46E-15 | 137 | 198 | No hit | No description |
SMART | SM00380 | 1.9E-24 | 138 | 202 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.2E-18 | 138 | 197 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.255 | 138 | 196 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-6 | 178 | 198 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0040008 | Biological Process | regulation of growth | ||||
GO:0045723 | Biological Process | positive regulation of fatty acid biosynthetic process | ||||
GO:1901959 | Biological Process | positive regulation of cutin biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000981 | Molecular Function | RNA polymerase II transcription factor activity, sequence-specific DNA binding | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MAKRSQKALK NTDTNSTAKR TRKTVPRDSP PQRSSIYRGV TRHRWTGRYE AHLWDKNCWN 60 ESQSKKGRQV YLGAYDDEEA AARAYDLAAL KYWGQDTILN FPLTNYEEML KEMEGQSKEE 120 YIGSLRRKSS GFSRGVSKYR GVARHHHNGR WEARIGRVFG NKYLYLGTYA TQEEAAAAYD 180 MAAIEYRGAN AVTNFDVSRY INWPGPKSEE ENQNVPVNEN VNSNAEIELG FVSHEHGSKS 240 DEITTEDAAQ SSESNPSRRT FPEDIQTIFE SQGPDIYTEN DDIIFGDLGS FGASIFHYEL 300 DV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.008G253600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 1e-149 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007142112.1 | 0.0 | hypothetical protein PHAVU_008G253600g | ||||
Swissprot | Q94AN4 | 1e-117 | AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060 | ||||
TrEMBL | V7BCB2 | 0.0 | V7BCB2_PHAVU; Uncharacterized protein | ||||
STRING | XP_007142112.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1300 | 34 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16060.1 | 1e-104 | ARIA-interacting double AP2 domain protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.008G253600.1 |
Entrez Gene | 18624005 |
Publications ? help Back to Top | |||
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