PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.008G249100.1 | ||||||||
Common Name | PHAVU_008G249100g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | LBD | ||||||||
Protein Properties | Length: 262aa MW: 28467.7 Da PI: 9.6959 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 132.7 | 1.5e-41 | 62 | 161 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +CaaCk+lrr+Ca++C+++pyf ++p+kf +vhk+FGasnv+k+l ++pe +r da++slvyeA+ r+rdPvyG++g i++lqqq+++l+ Phvul.008G249100.1 62 PCAACKLLRRRCAEECPFSPYFSPHEPQKFVAVHKVFGASNVSKMLLEVPEGQRADAANSLVYEANLRLRDPVYGCMGAISALQQQVQSLQ 152 7****************************************************************************************** PP DUF260 92 aelallkee 100 ael++++ee Phvul.008G249100.1 153 AELNAIREE 161 ****99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.444 | 61 | 162 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.5E-41 | 62 | 159 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MKQNLSPSQH TLIKKIKRHV WTSRDRLDEI TKIRAEVEAS SQMGRKHFYG PIPGITLNTV 60 TPCAACKLLR RRCAEECPFS PYFSPHEPQK FVAVHKVFGA SNVSKMLLEV PEGQRADAAN 120 SLVYEANLRL RDPVYGCMGA ISALQQQVQS LQAELNAIRE EILKYKYREA ASLISSNHAA 180 LVSSADAISA AIPANSQPQG LSQLPPPPLP KQLPAPPLKP LPSPSVILSS FSSSSTSSVY 240 TPKSSMSLGS ISTTENVPYF V* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-43 | 62 | 173 | 11 | 122 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-43 | 62 | 173 | 11 | 122 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.008G249100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 0.0 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007142059.1 | 0.0 | hypothetical protein PHAVU_008G249100g | ||||
Swissprot | Q9AT61 | 9e-73 | LBD13_ARATH; LOB domain-containing protein 13 | ||||
TrEMBL | V7BB15 | 0.0 | V7BB15_PHAVU; Uncharacterized protein | ||||
STRING | XP_007142059.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2298 | 34 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 5e-67 | LOB domain-containing protein 15 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.008G249100.1 |
Entrez Gene | 18623960 |
Publications ? help Back to Top | |||
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