PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.008G231300.1 | ||||||||
Common Name | PHAVU_008G231300g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | C2H2 | ||||||||
Protein Properties | Length: 254aa MW: 29005.1 Da PI: 9.7934 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14 | 0.00015 | 59 | 81 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ F++ L H++ H Phvul.008G231300.1 59 YSCTFCKREFRSAQALGGHMNIH 81 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.24E-6 | 56 | 86 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 7.3E-4 | 57 | 84 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.136 | 59 | 86 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0072 | 59 | 81 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 3.5E-6 | 59 | 82 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 61 | 81 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0048441 | Biological Process | petal development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MGSHYQYWMH VRREQIMNSQ PHKAPIIGDV RKNNWEERAF AEDATRRSLG WSMWPPRSYS 60 CTFCKREFRS AQALGGHMNI HRRDRARLKQ NLRAHHNYEP FSHHYHHQND VTIKSSLATT 120 ISTTRSLSCI STQQNCVILG QMGSPKSEQE RVVKAKEYSF KALGCSDFVE TSLSVGLTSM 180 FGQNSSPIVP CWDTPKISCK RLKNTISSLP LFLRPCSKDE GLAFQPLEIS LGLHHGIEDL 240 DLELRLGKQH KVK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 1e-12 | 54 | 81 | 2 | 29 | superman protein |
2l1o_A | 1e-12 | 54 | 81 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.008G231300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 4e-54 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007141854.1 | 0.0 | hypothetical protein PHAVU_008G231300g | ||||
TrEMBL | V7BAG4 | 0.0 | V7BAG4_PHAVU; Uncharacterized protein | ||||
STRING | XP_007141854.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1776 | 30 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06070.1 | 1e-26 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.008G231300.1 |
Entrez Gene | 18623775 |