PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G223400.1
Common NamePHAVU_008G223400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C3H
Protein Properties Length: 684aa    MW: 75073.5 Da    PI: 6.9573
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G223400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.63.2e-06276296526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                         +C+ f++ G C+  d+C +aHg
  Phvul.008G223400.1 276 PCPEFRK-GACQKVDSCEYAHG 296
                         8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484031.43E-1430153IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.4E-1532180IPR020683Ankyrin repeat-containing domain
PfamPF127961.9E-876142IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.20276156IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0576106IPR002110Ankyrin repeat
CDDcd002043.15E-1278151No hitNo description
PROSITE profilePS5008811.674111146IPR002110Ankyrin repeat
SMARTSM002480.015111143IPR002110Ankyrin repeat
PROSITE profilePS5010311.366271298IPR000571Zinc finger, CCCH-type
SMARTSM003560.0062271297IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.1E-4303335IPR000571Zinc finger, CCCH-type
SMARTSM0035625306329IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.15306330IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 684 aa     Download sequence    Send to blast
MCSDSKSKLS SPRLVMENNV QKQNLVGFCN FSALLELSAC DDFEGFKREV DEKGLDVNEA  60
GFWYGRRIGS KKMGSETRTP LMIASLFGST RVLKYILEAG TVDVNRACGS DRATALHCAA  120
AGGSESSPEI VKLLLDAGAD AESLDATGNK PANLVAPAFD SSSKSRRKAM ELFLRGGERD  180
EVMSQEMELQ MFSAPFSAKE GGEKKEGSDK KEYPVDISLP DINSDVYGSD EFRMYSFKVK  240
PCSRAYSHDW TECPFVHPGE NARRRDPRKY PYSCVPCPEF RKGACQKVDS CEYAHGVFES  300
WLHPAQYRTR LCKDETGCSR KVCFFAHKPE ELRPVYASTG SAMPSPKSYS STALDMTAMS  360
PLALSSTSLP MPTVSTPPMS PLAAASSPKS GNLWQNKINL TPPSLQLPGS RLKAALSARD  420
LEMEMELFGL DSPARQQQQQ QQQQLIEEIA RISSPSFRNK EFNRIADLNP TNLDDLLASA  480
DPSMLSQLHG LSVQTSTPTQ SGLQMRQNMN HLRASYPSNI PSSPVRKPSA FGFDSSAAVA  540
AAVMNSRSAA FAKRSQSFID RGAAIHHLGL SSPSNPSCRV SSTLSDWSSP TGKLDWGVNG  600
DELNKLRRSA SFGFRNNGVS ASPIAHPEHV EPDVSWVHSL VKDVPSERRS DMFGGERQQY  660
DLSKEMLPPW VEQLYIEQEQ MVA*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G223400.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007141759.10.0hypothetical protein PHAVU_008G223400g
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLV7BA690.0V7BA69_PHAVU; Uncharacterized protein
STRINGXP_007141759.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17963490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.20.0C3H family protein