PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.008G222700.1 | ||||||||
Common Name | PHAVU_008G222700g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | bHLH | ||||||||
Protein Properties | Length: 258aa MW: 28404.7 Da PI: 9.4622 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43.4 | 6.1e-14 | 69 | 115 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+++E+rRRdriN +++Lr+l+Pk+ K++Ka+ L +v+++k+L Phvul.008G222700.1 69 KSHSQAEKRRRDRINAQLATLRKLIPKS-----DKMDKAALLGSVVDHVKDL 115 79*************************8.....7****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.415 | 66 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.1E-15 | 69 | 118 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.2E-11 | 69 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.13E-11 | 69 | 118 | No hit | No description |
SuperFamily | SSF47459 | 6.8E-13 | 69 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.6E-11 | 72 | 121 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MESYHYSGWP LATNMAQCNS APNSDQLSPF SVPTTQTLPL ASDPASLQFS EFPLWPATIA 60 EDRVASASKS HSQAEKRRRD RINAQLATLR KLIPKSDKMD KAALLGSVVD HVKDLKRKAM 120 CVSKAITVPT ETDEVKIDFH EAKDESYTKV KILKENIIIK ASVCCDDRPE VFPELIQVLK 180 GLRLTAVKAD IASVGGRIKS ILVLCSKDSE ENSVCLSTLK QSLKSAVNKI ASLSVATNCP 240 TRSKRQRFFF PSHYVQP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.008G222700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT090046 | 0.0 | BT090046.1 Soybean clone JCVI-FLGm-3B13 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007141752.1 | 0.0 | hypothetical protein PHAVU_008G222700g | ||||
TrEMBL | V7BBB1 | 0.0 | V7BBB1_PHAVU; Uncharacterized protein | ||||
STRING | XP_007141752.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5796 | 33 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40200.1 | 9e-48 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.008G222700.1 |
Entrez Gene | 18623687 |