PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G214700.1
Common NamePHAVU_008G214700g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 205aa    MW: 22424.2 Da    PI: 8.0211
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G214700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.96.9e-202676155
                 AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        ++++GVr ++ +gr++AeIrd ++    ++r++lg+f++ae+Aa+a++aa+++++g
  Phvul.008G214700.1 26 TRFRGVRKRP-WGRFAAEIRDpWK----KQRVWLGTFDSAEDAARAYDAAARSFRG 76
                        589*******.**********883....5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.33E-192684No hitNo description
PfamPF008472.1E-122676IPR001471AP2/ERF domain
SuperFamilySSF541715.23E-222785IPR016177DNA-binding domain
SMARTSM003801.1E-362790IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.3E-312784IPR001471AP2/ERF domain
PROSITE profilePS5103223.4852784IPR001471AP2/ERF domain
PRINTSPR003675.0E-102839IPR001471AP2/ERF domain
PRINTSPR003675.0E-105066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MRRGRPTAAV AAVHPSADHH PPPKETRFRG VRKRPWGRFA AEIRDPWKKQ RVWLGTFDSA  60
EDAARAYDAA ARSFRGPKAK TNFPFPNPET DHSHSQIPLY QAHGLSKFDP VQVNRPTTSG  120
MSSTVESFSG PRVPSSSTLH PRKPVVSPVV IPPLDDCHSD CDSSSVVEDE DCVLTSSFRQ  180
PLPFDLNLPP PGADDDIPAT VLCL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-2027841472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G214700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007141662.11e-147hypothetical protein PHAVU_008G214700g
SwissprotQ9SXS82e-44ERF3_TOBAC; Ethylene-responsive transcription factor 3
TrEMBLV7BB431e-146V7BB43_PHAVU; Uncharacterized protein
STRINGXP_007141662.11e-147(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22633484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.12e-35ethylene responsive element binding factor 3