PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G214600.2
Common NamePHAVU_008G214600g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C3H
Protein Properties Length: 421aa    MW: 46100.6 Da    PI: 8.0526
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G214600.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH314.4e-104772126
                        --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                        ++++ C +++rtG C yG++C+++H+
  Phvul.008G214600.2 47 PGEPDCLYYLRTGMCGYGSNCRYHHP 72
                        5789*********************8 PP
2zf-CCCH37.93.1e-1290115227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         +++ C +f++tGtCkyG++Ck++H++
  Phvul.008G214600.2  90 GQPDCEYFLKTGTCKYGSTCKYHHPK 115
                         5799********************96 PP
3zf-CCCH38.12.5e-12138160527
                         --SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                          C++++rtG Ck+G  CkF+H++
  Phvul.008G214600.2 138 SCPYYMRTGSCKFGVACKFHHPQ 160
                         6********************97 PP
4zf-CCCH40.16.2e-13273298227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++Cr+f+ tGtCkyG+ CkF+H++
  Phvul.008G214600.2 273 DQPECRYFMSTGTCKYGSDCKFHHPK 298
                         689*********************96 PP
5zf-CCCH322.1e-10316340226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         +++ C++++ +G Ck+G++CkF H+
  Phvul.008G214600.2 316 GQAVCSYYRIYGMCKFGPTCKFDHP 340
                         7899********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.6E-54673IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.9864674IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-74872IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.94E-65173IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.78888116IPR000571Zinc finger, CCCH-type
SMARTSM003567.4E-788115IPR000571Zinc finger, CCCH-type
PfamPF006426.7E-1090115IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-692117IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-594115IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-6132161IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.638133161IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-4135160IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-10137160IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.2E-5138161IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.624271299IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-6271298IPR000571Zinc finger, CCCH-type
PfamPF006428.3E-11273298IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-7275300IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-6277298IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5312340IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-6314341IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.544314342IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-7316340IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MPENRQVHRN ADSTPSGDNI EAIRRLKIND NWDRDAAAQS TQYPDRPGEP DCLYYLRTGM  60
CGYGSNCRYH HPAHISIGTH YGEELPQRTG QPDCEYFLKT GTCKYGSTCK YHHPKDRRGA  120
APVSFNTLGL PMRQEEKSCP YYMRTGSCKF GVACKFHHPQ HASLGAYPLA GSPTSTTIIP  180
TSGLPYAGGF PAWSAVPRMS YLSGQGVQSY VPPFLSSSQS IIPMQSWNNY MGSMNPTMPT  240
GYLGSNLVYD FMNLGESLFG GQAINSALPN RPDQPECRYF MSTGTCKYGS DCKFHHPKER  300
VSQSLINPLG LPVRPGQAVC SYYRIYGMCK FGPTCKFDHP VLTIPQNYGL TSPALSALDA  360
PLISNQRGLS SVQSPETSPS KLSSDNKLQH SDAKAGTEDS SKQADTTPNS FPASSEPLHD  420
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G214600.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0976690.0BT097669.1 Soybean clone JCVI-FLGm-22K6 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007141661.10.0hypothetical protein PHAVU_008G214600g
TrEMBLV7B7X80.0V7B7X8_PHAVU; Uncharacterized protein
STRINGXP_007141660.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.21e-114C3H family protein