PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.008G197600.1 | ||||||||
Common Name | PHAVU_008G197600g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | ARF | ||||||||
Protein Properties | Length: 895aa MW: 98827 Da PI: 6.5791 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.1 | 8.1e-24 | 129 | 230 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k+lt sd++++g +++p++ ae+ +++++ ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F Phvul.008G197600.1 129 FCKTLTASDTSTHGGFSVPRRAAEKVfppldysQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI- 216 99*****************************8544444..48************************************************. PP -SSSEE..EEEEE-S CS B3 85 dgrsefelvvkvfrk 99 ++++ +l+++++r+ Phvul.008G197600.1 217 -WNEKNQLLLGIRRA 230 .8899999****997 PP | |||||||
2 | Auxin_resp | 120.2 | 1.6e-39 | 255 | 338 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrW+nS+Wrs+k Phvul.008G197600.1 255 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWSNSHWRSVK 338 79*********************************9789******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.03E-48 | 115 | 258 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.4E-42 | 121 | 244 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.07E-21 | 128 | 229 | No hit | No description |
PROSITE profile | PS50863 | 12.548 | 129 | 231 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.8E-24 | 129 | 231 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.2E-22 | 129 | 230 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.4E-34 | 255 | 338 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.1E-8 | 746 | 842 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 1.11E-7 | 751 | 834 | No hit | No description |
PROSITE profile | PS51745 | 23.473 | 758 | 844 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 895 aa Download sequence Send to blast |
MKLSSSGFNQ PGEEEGEKKC LNSELWHACA GPLVSLPPVG SRVVYFPQGH SEQVAASTNR 60 EVDAHIPNYP NLPPQLICQL HNVTMHADAE TDEVYAQITL QPLNPQEQKE VYLMPAELGS 120 PNKQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDY SQQPPAQELI ARDLHDNEWK 180 FRHIFRGQPK RHLLTTGWSV FVSAKRLVAG DSVLFIWNEK NQLLLGIRRA NRPQTIMPSS 240 VLSSDSMHIG LLAAAAHAAA TNSRFTIFYN PRASPSEFVI PLAKYVKAVY HTRVSVGMRF 300 RMLFETEESS VRRYMGTITG ISDLDPVRWS NSHWRSVKVG WDESTAGERQ PRVSLWEIEP 360 LTTFPMYPSP FPLRLRRPWP TGLPSLYGLK DGDMGLGSPF MWLQGGLGDQ GMQSLNFQGL 420 GVAPWMQPKL DSSIPGLQPE LYQAMTSAAF QEMRTMDPSK SSQSLLQFQQ TSNVPSAHTS 480 EVHRQVLPQS QPQSTLLQNF QENQVPPQSQ LLQQQLHRYH PYSDQRQQQQ LKNLPVQQQL 540 PNIISPLSNF ASGTQSQSPP MQALATHCQQ QSFPEPIRNH ISGSDVSPIQ SLLGSFSQDG 600 TSQLLNLNGS NSIISSASIL PKQMTVESQL PSAAPQCVLP QVENLGTSQS NVSELAALPP 660 FPGREHSAYH GAADPQSNLL FGINIDPSSL MLQNGMSNLR NMGNVNDSLS LPFSASNCGG 720 ATGTDFPLSS NMTTSSCMDE SGFLQSSENV DQANTPTGTF VKVHKSGSFG RSLDISKFSS 780 YDELRSELAR MFGLEGQLED PKTQRSGWQL VFVDRENDVL LLGDDPWQEF VNNVWYIKIL 840 SPLEVQQMGK GVSPSTSAPG HKLSTSGNSC DNYVNQQELR SSRNGMASMG SFHY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-163 | 13 | 359 | 42 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.008G197600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 0.0 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007141460.1 | 0.0 | hypothetical protein PHAVU_008G197600g | ||||
Swissprot | A2X1A1 | 0.0 | ARFF_ORYSI; Auxin response factor 6 | ||||
Swissprot | Q6H6V4 | 0.0 | ARFF_ORYSJ; Auxin response factor 6 | ||||
TrEMBL | V7B6L0 | 0.0 | V7B6L0_PHAVU; Auxin response factor | ||||
STRING | XP_007141460.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1765 | 34 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30330.2 | 0.0 | auxin response factor 6 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.008G197600.1 |
Entrez Gene | 18623430 |
Publications ? help Back to Top | |||
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