PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G197600.1
Common NamePHAVU_008G197600g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ARF
Protein Properties Length: 895aa    MW: 98827 Da    PI: 6.5791
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G197600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.18.1e-24129230199
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F  
  Phvul.008G197600.1 129 FCKTLTASDTSTHGGFSVPRRAAEKVfppldysQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI- 216
                         99*****************************8544444..48************************************************. PP

                         -SSSEE..EEEEE-S CS
                  B3  85 dgrsefelvvkvfrk 99 
                          ++++ +l+++++r+
  Phvul.008G197600.1 217 -WNEKNQLLLGIRRA 230
                         .8899999****997 PP
2Auxin_resp120.21.6e-39255338183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                         aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrW+nS+Wrs+k
  Phvul.008G197600.1 255 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWSNSHWRSVK 338
                         79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.03E-48115258IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.4E-42121244IPR015300DNA-binding pseudobarrel domain
CDDcd100171.07E-21128229No hitNo description
PROSITE profilePS5086312.548129231IPR003340B3 DNA binding domain
SMARTSM010191.8E-24129231IPR003340B3 DNA binding domain
PfamPF023625.2E-22129230IPR003340B3 DNA binding domain
PfamPF065072.4E-34255338IPR010525Auxin response factor
PfamPF023091.1E-8746842IPR033389AUX/IAA domain
SuperFamilySSF542771.11E-7751834No hitNo description
PROSITE profilePS5174523.473758844IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 895 aa     Download sequence    Send to blast
MKLSSSGFNQ PGEEEGEKKC LNSELWHACA GPLVSLPPVG SRVVYFPQGH SEQVAASTNR  60
EVDAHIPNYP NLPPQLICQL HNVTMHADAE TDEVYAQITL QPLNPQEQKE VYLMPAELGS  120
PNKQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDY SQQPPAQELI ARDLHDNEWK  180
FRHIFRGQPK RHLLTTGWSV FVSAKRLVAG DSVLFIWNEK NQLLLGIRRA NRPQTIMPSS  240
VLSSDSMHIG LLAAAAHAAA TNSRFTIFYN PRASPSEFVI PLAKYVKAVY HTRVSVGMRF  300
RMLFETEESS VRRYMGTITG ISDLDPVRWS NSHWRSVKVG WDESTAGERQ PRVSLWEIEP  360
LTTFPMYPSP FPLRLRRPWP TGLPSLYGLK DGDMGLGSPF MWLQGGLGDQ GMQSLNFQGL  420
GVAPWMQPKL DSSIPGLQPE LYQAMTSAAF QEMRTMDPSK SSQSLLQFQQ TSNVPSAHTS  480
EVHRQVLPQS QPQSTLLQNF QENQVPPQSQ LLQQQLHRYH PYSDQRQQQQ LKNLPVQQQL  540
PNIISPLSNF ASGTQSQSPP MQALATHCQQ QSFPEPIRNH ISGSDVSPIQ SLLGSFSQDG  600
TSQLLNLNGS NSIISSASIL PKQMTVESQL PSAAPQCVLP QVENLGTSQS NVSELAALPP  660
FPGREHSAYH GAADPQSNLL FGINIDPSSL MLQNGMSNLR NMGNVNDSLS LPFSASNCGG  720
ATGTDFPLSS NMTTSSCMDE SGFLQSSENV DQANTPTGTF VKVHKSGSFG RSLDISKFSS  780
YDELRSELAR MFGLEGQLED PKTQRSGWQL VFVDRENDVL LLGDDPWQEF VNNVWYIKIL  840
SPLEVQQMGK GVSPSTSAPG HKLSTSGNSC DNYVNQQELR SSRNGMASMG SFHY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1631335942388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G197600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007141460.10.0hypothetical protein PHAVU_008G197600g
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLV7B6L00.0V7B6L0_PHAVU; Auxin response factor
STRINGXP_007141460.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17653488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]