PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G196800.2
Common NamePHAVU_008G196800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 550aa    MW: 60644.6 Da    PI: 6.5982
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G196800.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.49.5e-17351397455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          hn  ErrRRdriN+++  L++l+P++      K +Ka++Le+A+eY+ksLq
  Phvul.008G196800.2 351 VHNLSERRRRDRINEKMRALQQLIPNS-----NKTDKASMLEEAIEYLKSLQ 397
                         6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.36E-20344409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.2E-19344403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.463347396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.29E-18350401No hitNo description
PfamPF000103.6E-14351397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-18353402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MNNTIPGWDF ESDTCLTNQR KPTGLDQEHV ELLWQNGQVV MHSQQNRRLL GNSSNMRQVQ  60
KTAQSTLRAS GPYENSNNLD QEEAAPWIQY PLDDPLEQEF CSNLLSELPP PCEVESYYMP  120
IRQLEEEKFA NIFSPSGPHH PPSPSQPLPS NMKSSCVQGL QENPMPASGF HVADSSQKIN  180
DFGASRKVLN FPHFSAHVSS TSQKPRAKLS QSEGREPSVI TVGSSHCGSN HIPQDQDVNW  240
VSSSGVWTTT NNITLSSEPE AVDCIQRPIP RSERGKSEMI EPTVTSSSGG SGSTGIGRTC  300
SLSTRDHGQK RKVTEEEAVE EQSEATELKS ADGNKLSQRT RPSRKNRAAE VHNLSERRRR  360
DRINEKMRAL QQLIPNSNKT DKASMLEEAI EYLKSLQFQL QVMCMGAGMT PVMFPGIQHY  420
MSQMGMGIGG PSLPSIHNPM QLPHAQPMSL THPQMPNQNL MCQNPVLGAF NYQNQMQNPC  480
LSEQYARYMG YHLLHSASQS MNNVLRYGSQ AMQHSETMIA GGNNSSGPMS GTANVDDAVS  540
GKTGSSTFN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1355360ERRRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G196800.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007141451.10.0hypothetical protein PHAVU_008G196800g
RefseqXP_007141452.10.0hypothetical protein PHAVU_008G196800g
TrEMBLV7BAF00.0V7BAF0_PHAVU; Uncharacterized protein
STRINGXP_007141451.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59060.15e-41phytochrome interacting factor 3-like 6