PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G192800.1
Common NamePHAVU_008G192800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family WRKY
Protein Properties Length: 334aa    MW: 37896.6 Da    PI: 8.1781
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G192800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.43e-33179236259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         +Dgy+WrKYGqK vk+s++prsYYrCts++C+vkk+vers +dp+vv++tYeg+Hnh+
  Phvul.008G192800.1 179 EDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCSVKKRVERSFQDPSVVITTYEGQHNHH 236
                         8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.1E-35163238IPR003657WRKY domain
SuperFamilySSF1182905.62E-29171238IPR003657WRKY domain
PROSITE profilePS5081132.202173238IPR003657WRKY domain
SMARTSM007747.3E-39178237IPR003657WRKY domain
PfamPF031062.9E-26179236IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MANEKDRFYD PFHYNHHEHQ LNLSSSFPSF RDNNNSAPIT TQNFQGFHHS PSHHRTTFTD  60
CLHGSMDYNT LSRAFDMSCS SSEVISSIDE NPKKPGAGDS AGISGNQSTP NSSVSSSSNE  120
AEALIEEDST KSQKKDKQPK GCEEGEEKPK KENKSKKKEK KAREPRFAFL TKSEIDNLED  180
GYRWRKYGQK AVKNSPYPRS YYRCTSQKCS VKKRVERSFQ DPSVVITTYE GQHNHHCPAT  240
LRGSAASMLS APPFFGSSYM GSSLPQDFLA QFLPSYSQND HPNPMFHQNL SHNLHLQQQQ  300
HQQHQHQHQF QLPRDYGLLQ DLLPSSFPAK QEP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-261712391078Probable WRKY transcription factor 4
2lex_A1e-261712391078Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G192800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150361e-164AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007141406.10.0hypothetical protein PHAVU_008G192800g
SwissprotQ8VWJ29e-58WRK28_ARATH; WRKY transcription factor 28
TrEMBLV7B7340.0V7B734_PHAVU; Uncharacterized protein
STRINGXP_007141406.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22313483
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.12e-49WRKY DNA-binding protein 71
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kim SH, et al.
    Characterization of a Novel DWD protein that participates in heat stress response in Arabidopsis.
    Mol. Cells, 2014. 37(11): p. 833-40
    [PMID:25358503]
  4. Zhao L, et al.
    KLU suppresses megasporocyte cell fate through SWR1-mediated activation of WRKY28 expression in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(3): p. E526-E535
    [PMID:29288215]