PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G190600.2
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MIKC_MADS
Protein Properties Length: 240aa    MW: 27549 Da    PI: 9.7055
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G190600.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.23.5e-312574150
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                        krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+++fss+g+lyey+
  Phvul.008G190600.2 25 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYA 74
                        79***********************************************8 PP
2K-box107.91.2e-35931894100
               K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                         s+ +s++ea+++ +qqe++kLk++i+ +q+ +Rh+lGe L+sLslkeL++Le++Lek+l+++Rs+K+e l++ ie +qk+e elq++n+ L
  Phvul.008G190600.2  93 SNAESVSEANTQFYQQESSKLKRQIRDIQNLNRHILGEALSSLSLKELKNLESRLEKGLSRVRSRKHETLFADIEFMQKREMELQNHNNFL 183
                         344459************************************************************************************* PP

               K-box  95 rkklee 100
                         r+k++e
  Phvul.008G190600.2 184 RAKIAE 189
                         ***986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.0951777IPR002100Transcription factor, MADS-box
SMARTSM004324.6E-401776IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.01E-331893IPR002100Transcription factor, MADS-box
CDDcd002651.11E-421887No hitNo description
PROSITE patternPS0035001973IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-331939IPR002100Transcription factor, MADS-box
PfamPF003199.8E-272673IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-333954IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-335475IPR002100Transcription factor, MADS-box
PfamPF014868.3E-26100187IPR002487Transcription factor, K-box
PROSITE profilePS5129714.829103193IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0090376Biological Processseed trichome differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MEFPNEAISE GCSQKKSGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA  60
LVVFSSRGRL YEYANNSVRG TIDRYKKASA ASSNAESVSE ANTQFYQQES SKLKRQIRDI  120
QNLNRHILGE ALSSLSLKEL KNLESRLEKG LSRVRSRKHE TLFADIEFMQ KREMELQNHN  180
NFLRAKIAEH EREQQQHMTG SVCESLPPSQ SYDRNFFPVN LIDSSHQYSR QDQTALQLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1egw_A5e-201885168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_B5e-201885168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_C5e-201885168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_D5e-201885168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1tqe_P6e-201889273Myocyte-specific enhancer factor 2B
1tqe_Q6e-201889273Myocyte-specific enhancer factor 2B
1tqe_R6e-201889273Myocyte-specific enhancer factor 2B
1tqe_S6e-201889273Myocyte-specific enhancer factor 2B
6c9l_A6e-201889273Myocyte-specific enhancer factor 2B
6c9l_B6e-201889273Myocyte-specific enhancer factor 2B
6c9l_C6e-201889273Myocyte-specific enhancer factor 2B
6c9l_D6e-201889273Myocyte-specific enhancer factor 2B
6c9l_E6e-201889273Myocyte-specific enhancer factor 2B
6c9l_F6e-201889273Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G190600.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0312740.0KT031274.1 Glycine max clone HN_CCL_16 MADS transcription factor (Glyma14g03100.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017431080.11e-170PREDICTED: agamous-like MADS-box protein AGL5
RefseqXP_017431081.11e-170PREDICTED: agamous-like MADS-box protein AGL5
RefseqXP_017431082.11e-170PREDICTED: agamous-like MADS-box protein AGL5
SwissprotQ93XH41e-123MADS1_VITVI; Agamous-like MADS-box protein MADS1
TrEMBLA0A0L9UUU31e-168A0A0L9UUU3_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RJK91e-168A0A0S3RJK9_PHAAN; Uncharacterized protein
STRINGGLYMA14G03100.11e-158(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58780.13e-91MIKC_MADS family protein
Publications ? help Back to Top
  1. Boss PK,Vivier M,Matsumoto S,Dry IB,Thomas MR
    A cDNA from grapevine (Vitis vinifera L.), which shows homology to AGAMOUS and SHATTERPROOF, is not only expressed in flowers but also throughout berry development.
    Plant Mol. Biol., 2001. 45(5): p. 541-53
    [PMID:11414613]
  2. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  3. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]