PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G190200.1
Common NamePHAVU_008G190200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family CO-like
Protein Properties Length: 412aa    MW: 45074.4 Da    PI: 5.0008
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G190200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box16.81.5e-05543638
            zf-B_box  6 CpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                        C+ +++++   +C+++  +lC +C  + H+       H+
  Phvul.008G190200.1  5 CDFCGDQRSLVYCRSDAACLCLSCDRNVHSAnalsrrHS 43
                        *****************************5566666676 PP
2zf-B_box17.67.9e-064489241
            zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                        ++  C++++ +++   C + +  lC++C    H +      H++++
  Phvul.008G190200.1 44 RNLLCERCNLQPAFVRCDEEKISLCQNCDWLAHGSsptsstHKRQT 89
                        6789*************************99994488888888766 PP
3CCT639e-22354397144
                 CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                         R +a++RYkeK+ktRkFeKk+rY+sRKa+A+ R RvKGrFvk+ 
  Phvul.008G190200.1 354 RSNAVMRYKEKKKTRKFEKKVRYASRKARADVRRRVKGRFVKAG 397
                         899**************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.314147IPR000315B-box-type zinc finger
SMARTSM003368.9E-8447IPR000315B-box-type zinc finger
CDDcd000216.09E-7444No hitNo description
PROSITE profilePS501198.8874390IPR000315B-box-type zinc finger
CDDcd000210.00344790No hitNo description
SMARTSM003360.894890IPR000315B-box-type zinc finger
PfamPF062032.8E-16354396IPR010402CCT domain
PROSITE profilePS5101715.398354396IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MGYLCDFCGD QRSLVYCRSD AACLCLSCDR NVHSANALSR RHSRNLLCER CNLQPAFVRC  60
DEEKISLCQN CDWLAHGSSP TSSTHKRQTI NCYSGCPSAA EFSSIWSFFL DIPSMGEACE  120
QELGLMSINE NGNKSDLVPP EGQNVSGSAQ VTDLPTKVKF WAGTSSIPVS GSEPRILDQP  180
PGPGNECMPK LYCPGKKNSG ICEDDNLYDD FIMDEVDLEL ENYEELFGMA LSHSEELFEN  240
GGFESLFEAK DMSASVGESH CQGAVVAEGS SAGLVNAIQS ACSNAASADS MLSTKTEPIV  300
CFTGRQSQSN ISFSGVTKES AGDYQDCDAS SMLLMGEPPW CPPCPESSLH SANRSNAVMR  360
YKEKKKTRKF EKKVRYASRK ARADVRRRVK GRFVKAGDVY DYDPLSQTRS F*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G190200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM0688990.0HM068899.1 Glycine max CONSTANS-like zinc finger protein (COL18) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007141372.10.0hypothetical protein PHAVU_008G190200g
SwissprotQ9LUA91e-144COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10
TrEMBLV7BA700.0V7BA70_PHAVU; Uncharacterized protein
STRINGXP_007141372.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43623353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.11e-119B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]