PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G182900.1
Common NamePHAVU_008G182900g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family GATA
Protein Properties Length: 312aa    MW: 33895.5 Da    PI: 6.3849
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G182900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.33.3e-16210245134
                GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                         C++Cg ++  Tp++Rrgp+g+++LCnaCGl+++ +g
  Phvul.008G182900.1 210 CTHCGISSksTPMMRRGPSGPRSLCNACGLFWANRG 245
                         *****99999**********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009791.8E-1373108IPR010399Tify domain
PROSITE profilePS5132015.23473108IPR010399Tify domain
PfamPF062006.1E-1474107IPR010399Tify domain
PROSITE profilePS5101712.481142184IPR010402CCT domain
PfamPF062036.2E-16142184IPR010402CCT domain
SMARTSM004011.4E-13204257IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.13E-12207258No hitNo description
Gene3DG3DSA:3.30.50.101.3E-15208251IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS501149.71209253IPR000679Zinc finger, GATA-type
CDDcd002025.73E-15209254No hitNo description
PfamPF003206.4E-14210245IPR000679Zinc finger, GATA-type
PROSITE patternPS003440210237IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MDPPAMYGHS QPLNMPPQIS TAESDDGSGP DPALDAHHHI HYETHALEDG ATGAMVVVED  60
VTSDAVYVSG GGGPEESSQL TLSFRGQVYV FDAVTPDKVQ AVLLLLGGCE LSSSGSPCVD  120
VVPQQNQRGS MEYPARCSLP QRAASLDRFR QKRKERCFDK KVRYSVRQEV ALRMHRNKGQ  180
FTSSKKQDGA NSYGTDQDSG QDDCQLETSC THCGISSKST PMMRRGPSGP RSLCNACGLF  240
WANRGALRDL SKRNHEHSLA PVEQVDEGND SDCRTAANPA HNNLAHAAYS EHDHPALVAD  300
RKVFQSQKML E*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00451DAPTransfer from AT4G24470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G182900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150361e-115AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007141281.10.0hypothetical protein PHAVU_008G182900g
SwissprotQ9LRH66e-94GAT25_ARATH; GATA transcription factor 25
TrEMBLV7B6S70.0V7B6S7_PHAVU; Uncharacterized protein
STRINGXP_007141281.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28363368
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.22e-88GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]