PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.008G172200.1 | ||||||||
Common Name | PHAVU_008G172200g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | ERF | ||||||||
Protein Properties | Length: 328aa MW: 36013.4 Da PI: 5.4435 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.3 | 1.2e-20 | 143 | 192 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ +l+g Phvul.008G172200.1 143 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYRLRG 192 59******9.**********965...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.29E-34 | 142 | 202 | No hit | No description |
SuperFamily | SSF54171 | 5.82E-23 | 143 | 201 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.9E-32 | 143 | 201 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.103 | 143 | 200 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-37 | 143 | 206 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-11 | 144 | 155 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.8E-14 | 144 | 192 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-11 | 166 | 182 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MAAMMDLYNG EPQVQSDPFT GELMEVLEPF MKSPSSTPSL SSDSALPSTS TSYSYSPYPL 60 SLPPHPNFYT DPSSSYLYQT QTLIGFQQQP SSVVGLNHLS PFQVSQIQAQ MQAQSQSSLS 120 LNFLGPKPVA MKQVGGAPKP AKLYRGVRQR HWGKWVAEIR LPKNRTRLWL GTFDTAEEAA 180 LAYDKAAYRL RGDFARLNFP NLKGSLLGEY KPLQSAVDAK LDAICQSLAE MPKQGKTEKG 240 ARSSSKKSKA APKEARNPNQ DPNPNLCCKA EPEPEAEPAL SPESEGSVDS SPLSDLTFDV 300 SEPQWEDASA HFNLQKFPSY EIDWDSL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-21 | 142 | 200 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.008G172200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 0.0 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007141161.1 | 0.0 | hypothetical protein PHAVU_008G172200g | ||||
Swissprot | Q8H1E4 | 5e-86 | RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4 | ||||
TrEMBL | V7B6I3 | 0.0 | V7B6I3_PHAVU; Uncharacterized protein | ||||
STRING | XP_007141161.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1057 | 32 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78080.1 | 1e-56 | related to AP2 4 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.008G172200.1 |
Entrez Gene | 18623169 |
Publications ? help Back to Top | |||
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