PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G170400.1
Common NamePHAVU_008G170400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MIKC_MADS
Protein Properties Length: 367aa    MW: 41816.6 Da    PI: 6.1572
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G170400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.34e-283685150
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                        krien++nrqvtfskRrng++KKA+ELS+LCd+++avi+fs++g++  +s
  Phvul.008G170400.1 36 KRIENSTNRQVTFSKRRNGLIKKAYELSILCDIDIAVIMFSPSGRVNHFS 85
                        79********************************************9997 PP
2K-box23.13.2e-091502171178
               K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqie 78 
                         +++ e+lqqe+++L++++++ ++++R +  + L+  s+ +L++ e++L + l+++ ++K+ l+  +++
  Phvul.008G170400.1 150 NSEIEELQQEVNRLQQQLQMAEEQIRLYEPDPLKMSSMGDLENSEKHLVDVLTRVMQRKEYLMSHHLS 217
                         57899**********************************************************98875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.5762888IPR002100Transcription factor, MADS-box
SMARTSM004321.6E-382887IPR002100Transcription factor, MADS-box
CDDcd002659.34E-3629102No hitNo description
SuperFamilySSF554555.49E-2929106IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-253050IPR002100Transcription factor, MADS-box
PROSITE patternPS0035003084IPR002100Transcription factor, MADS-box
PfamPF003195.5E-263784IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-255065IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-256586IPR002100Transcription factor, MADS-box
PfamPF014861.5E-5152217IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MHTTPNTILH SFYLHNNNNN NNNNRIEMGR VKLEIKRIEN STNRQVTFSK RRNGLIKKAY  60
ELSILCDIDI AVIMFSPSGR VNHFSGRRRI EDVFTRYINL PDQERDNAVS FPELPYRRGI  120
QNKEYLLRTL QQLRSENDIA LQLANPGDIN SEIEELQQEV NRLQQQLQMA EEQIRLYEPD  180
PLKMSSMGDL ENSEKHLVDV LTRVMQRKEY LMSHHLSSFD PSSIQGIPTS FDNVGWLQDG  240
SQNHAQIFDG SAPLDPLRDL SSTVYGSFSQ GTSSNADPRG MGECHVSNPS DGSLQAWPQG  300
YTLYPHHHIQ HDMVGPDMPD MMPHAQVSIP ITASHVEPPP KNEPGEYDQS KQQQQPHPHP  360
QQLNAQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A3e-1628117191MEF2 CHIMERA
6bz1_B3e-1628117191MEF2 CHIMERA
6bz1_C3e-1628117191MEF2 CHIMERA
6bz1_D3e-1628117191MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G170400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0897450.0BT089745.1 Soybean clone JCVI-FLGm-14M9 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007141136.10.0hypothetical protein PHAVU_008G170400g
SwissprotQ9LM461e-118AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBLV7B6F00.0V7B6F0_PHAVU; Uncharacterized protein
STRINGXP_007141136.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85252735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.11e-102AGAMOUS-like 104
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]