PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.008G157100.1 | ||||||||
Common Name | PHAVU_008G157100g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | SBP | ||||||||
Protein Properties | Length: 345aa MW: 37545.8 Da PI: 9.0287 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 130.7 | 5.2e-41 | 178 | 255 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC++ l +ak+yhrrhkvCe+hskap+v+v gleqrfCqqCsrfh +sefD++krsCrrrLa+hnerrrk+++ Phvul.008G157100.1 178 RCQVEGCQVALLNAKDYHRRHKVCEMHSKAPKVVVLGLEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSSH 255 6**************************************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 6.2E-35 | 174 | 240 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.445 | 176 | 253 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.01E-38 | 177 | 258 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 4.3E-32 | 179 | 252 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 345 aa Download sequence Send to blast |
MEFGGNIFCL ANRDQNGNTN GNTFAWDSWQ TTTFNNNNNT TSRLVNAFNA PVTGVTAPET 60 SAANRPEAAG LASALMFLPQ NGGVLRHRQQ QQQQQHPYGG DGSHVHPDPH LMCLKLGKRH 120 YFEDASGSGT VSSAAASAAT ATTFGGGLVL GDKRGKGGYS GGGAAVKGVG LTTATVPRCQ 180 VEGCQVALLN AKDYHRRHKV CEMHSKAPKV VVLGLEQRFC QQCSRFHVVS EFDDSKRSCR 240 RRLAGHNERR RKSSHDSVAR NSSQGGCALS LLSSRSDSWL SPSDLSTRCS AALRELIAEN 300 RAAIMARQFV SDRDWHIQHH AMEDMKEIQP ESTYFPQQMF PQTQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 3e-30 | 179 | 252 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.008G157100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007140980.1 | 0.0 | hypothetical protein PHAVU_008G157100g | ||||
Swissprot | Q01JD1 | 5e-56 | SPL7_ORYSI; Squamosa promoter-binding-like protein 7 | ||||
Swissprot | Q7XT42 | 4e-56 | SPL7_ORYSJ; Squamosa promoter-binding-like protein 7 | ||||
TrEMBL | V7B583 | 0.0 | V7B583_PHAVU; Uncharacterized protein | ||||
STRING | XP_007140980.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9613 | 27 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33810.1 | 1e-35 | squamosa promoter binding protein-like 3 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.008G157100.1 |
Entrez Gene | 18623011 |
Publications ? help Back to Top | |||
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