PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G146900.1
Common NamePHAVU_008G146900g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB
Protein Properties Length: 269aa    MW: 30827.7 Da    PI: 5.7049
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G146900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.41.7e-131461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg+WT eEd +l + +   G ++W+++++  g+ R++k+c++rw +yl
  Phvul.008G146900.1 14 RGPWTIEEDHKLMNFILNNGIHCWRRVPKLAGLLRCGKSCRLRWINYL 61
                        89******************************99************97 PP
2Myb_DNA-binding49.97.4e-1667110146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg +T+ E+ ++++++ +lG + W++Ia++++ gRt++++k++w++
  Phvul.008G146900.1  67 RGGFTEMEEVQIIQLHSRLGYR-WSKIASHFP-GRTDNEIKNHWNT 110
                         788*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.8E-21564IPR009057Homeodomain-like
PROSITE profilePS5129413.825961IPR017930Myb domain
SuperFamilySSF466892.43E-2711108IPR009057Homeodomain-like
SMARTSM007171.4E-61363IPR001005SANT/Myb domain
PfamPF002496.3E-121461IPR001005SANT/Myb domain
CDDcd001676.70E-51661No hitNo description
PROSITE profilePS5129423.12462116IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.8E-2465116IPR009057Homeodomain-like
SMARTSM007176.0E-1566114IPR001005SANT/Myb domain
PfamPF002493.7E-1467110IPR001005SANT/Myb domain
CDDcd001672.56E-1070110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MGRQPCCDKV GLKRGPWTIE EDHKLMNFIL NNGIHCWRRV PKLAGLLRCG KSCRLRWINY  60
LRPDLKRGGF TEMEEVQIIQ LHSRLGYRWS KIASHFPGRT DNEIKNHWNT RIKKKFKLLG  120
LDPVTQKPPI EPKESTDEGR NNTDYPHTCI SGGCLQNVEI KSMESDGSRE MTKTEGEREE  180
KKVTWDETTE LLNNFEMLCS PLELGSWVSQ GTNTSTNSLC SSSVSLDDES SYVLENSLEQ  240
WVDSMNSILS WDGFNPFDQD IFFSENGE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25121165108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00510DAPTransfer from AT5G14340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G146900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150442e-37AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007140849.10.0hypothetical protein PHAVU_008G146900g
TrEMBLV7B7L30.0V7B7L3_PHAVU; Uncharacterized protein
STRINGXP_007140849.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66253150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.16e-85myb domain protein 40