PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G141000.1
Common NamePHAVU_008G141000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 310aa    MW: 33899.2 Da    PI: 6.5094
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G141000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.13.8e-17117168156
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         + y+GVr +  +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a ++++g+
  Phvul.008G141000.1 117 PSYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVATLAIKGH 168
                         57*****998.**********843...6********************99988875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.5E-12117168IPR001471AP2/ERF domain
CDDcd000181.36E-31117177No hitNo description
Gene3DG3DSA:3.30.730.106.6E-31118176IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-21118176IPR016177DNA-binding domain
SMARTSM003801.1E-35118181IPR001471AP2/ERF domain
PROSITE profilePS5103222.893118175IPR001471AP2/ERF domain
PRINTSPR003673.6E-10119130IPR001471AP2/ERF domain
PRINTSPR003673.6E-10141157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MCPSLILCSS LIKPHPLAFF LGKHINMESD AGENLFGTFF SSSTSMTISI TTHTISSSSS  60
SSAAASPTSS TSSSNSCTKQ DSQTSPPDDS TRPQNKNTPN SKERKKRQRN GSDNKHPSYR  120
GVRMRAWGKW VSEIREPRKK SRIWLGTYPT AEMAARAHDV ATLAIKGHSA YLNFPNLAQD  180
LPRPITTSPK DIQAAAAKAA STFFDDDKHC EAEKDEENHA EQASSSTLRM DSTEAEQVQA  240
KQASSFTLSM DNTQGSSTSH STADDDTLFD LPDLFPDGNN GLFSNSSSWR LCAVDSGFRH  300
EEQLLWENY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-17111176773Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G141000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007140776.10.0hypothetical protein PHAVU_008G141000g
SwissprotQ8LBQ72e-63ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLV7B5C70.0V7B5C7_PHAVU; Uncharacterized protein
STRINGXP_007140776.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.15e-51ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]