PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G140100.1
Common NamePHAVU_008G140100g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family B3
Protein Properties Length: 160aa    MW: 18670.2 Da    PI: 9.1687
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G140100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3651.1e-2026112598
                         -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                  B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                         +  s++l +g l+lp kf++++g+    + t+ l+ ++  +Wevkl  +k++g++++++GWkeFv+ + L  g  +vF+++g+s f  +v 
  Phvul.008G140100.1  26 M-LSHNLLHGKLRLPSKFVSKYGNH--LPNTIFLKLPNDAEWEVKL--EKSDGSVWFQQGWKEFVEYHCLAHGHLLVFRYNGTSHF--HVL 109
                         4.478888999***********966..889****************..*********************************99999..999 PP

                         EE- CS
                  B3  96 vfr 98 
                         +++
  Phvul.008G140100.1 110 ICD 112
                         998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-2617115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.39E-2517114IPR015300DNA-binding pseudobarrel domain
CDDcd100173.04E-2121112No hitNo description
PROSITE profilePS5086313.57821114IPR003340B3 DNA binding domain
SMARTSM010197.2E-2022114IPR003340B3 DNA binding domain
PfamPF023621.2E-1725112IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MTSKLNQRDD SHGGSASKPI HFFRIMLSHN LLHGKLRLPS KFVSKYGNHL PNTIFLKLPN  60
DAEWEVKLEK SDGSVWFQQG WKEFVEYHCL AHGHLLVFRY NGTSHFHVLI CDMSCMEIDY  120
PVNKANQKRV RINSEDIQPA KTQKPTQNEK RSDEDVRDHK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G140100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-141AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007140766.11e-119hypothetical protein PHAVU_008G140100g, partial
TrEMBLV7B5C11e-118V7B5C1_PHAVU; Uncharacterized protein (Fragment)
STRINGXP_007140766.11e-118(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.18e-25B3 family protein