PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.008G138000.1 | ||||||||
Common Name | PHAVU_008G138000g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | FAR1 | ||||||||
Protein Properties | Length: 220aa MW: 24915.5 Da PI: 8.2684 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 85.4 | 8.9e-27 | 48 | 137 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 kfY +YA++vGF vr+ + ++s +g++ r++ C+k+g++ ++k + e+++r++ r gCka++ vk+ek+gkw+vt++ ++HnH+l Phvul.008G138000.1 48 KFYIDYARRVGFVVRIMQRRRSGIDGRTLARRLGCNKQGFSPNNKGALGPEKKPRPSAREGCKATILVKLEKSGKWVVTRFIKDHNHPLI 137 6***************************************************************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 7.5E-25 | 48 | 137 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MDFVVVDSDK ANEAECSCLE ESTSIYEGVE IQEPYVGMEF DSEVAARKFY IDYARRVGFV 60 VRIMQRRRSG IDGRTLARRL GCNKQGFSPN NKGALGPEKK PRPSAREGCK ATILVKLEKS 120 GKWVVTRFIK DHNHPLIATA NGFGTVGDKD KKISELTMEL ERQDQLCAAY REKLLSFINN 180 VEEETEELST KIQLVIENVR RAESEMKKCS QNRKPWCLT* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.008G138000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007140743.1 | 1e-163 | hypothetical protein PHAVU_008G138000g | ||||
TrEMBL | V7B4B6 | 1e-161 | V7B4B6_PHAVU; Uncharacterized protein | ||||
STRING | XP_007140743.1 | 1e-162 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF965 | 31 | 104 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G12850.1 | 2e-75 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.008G138000.1 |
Entrez Gene | 18622810 |