PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Phvul.008G118400.1 | ||||||||
Common Name | PHAVU_008G118400g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
|
||||||||
Family | ARF | ||||||||
Protein Properties | Length: 660aa MW: 73890.4 Da PI: 6.4738 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 77.2 | 1.7e-24 | 116 | 216 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+kvlt sd++++g +++ +k+a+e+ ++k++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF + Phvul.008G118400.1 116 FCKVLTASDTSTHGGFSVLRKHATEClpaldMSKSTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFL--R 204 99****************************9555555679************************************************..4 PP SSEE..EEEEE- CS B3 87 rsefelvvkvfr 98 s++el+v+v+r Phvul.008G118400.1 205 GSNGELRVGVRR 216 49999*****98 PP | |||||||
2 | Auxin_resp | 85.7 | 9.1e-29 | 242 | 323 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsse..rrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t++ F v+Y+Pr+ s+F+v+v+k+++a+++k+ vGmR+k + e++ds e +r+sGt++gv+d++p +W nSkWrsLk Phvul.008G118400.1 242 ASHAVATQTLFVVYYKPRT--SQFIVSVNKYLEAINQKCNVGMRLKTRSEGDDSTEtdKRFSGTIIGVEDISP-HWVNSKWRSLK 323 789***************6..9********************************9833577**********99.*********96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 6.41E-39 | 107 | 245 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.0E-39 | 109 | 231 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.74E-20 | 114 | 216 | No hit | No description |
PROSITE profile | PS50863 | 12.238 | 116 | 218 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.3E-22 | 116 | 216 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.2E-22 | 116 | 218 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.8E-27 | 242 | 323 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.6E-13 | 538 | 636 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 25.328 | 549 | 630 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 2.29E-12 | 552 | 625 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 660 aa Download sequence Send to blast |
MSLHRGEEDE LYEQLWKACA GPHVEIPRAG QRVFYFPQGH MEQLEVSTNQ ELNQRIPLFK 60 LPSEILCRVV NVHLLAEQET DEVYAQITLV PENNQTEPTC PDPCPSEVPR PRVHSFCKVL 120 TASDTSTHGG FSVLRKHATE CLPALDMSKS TPTQELVAKD LHGYEWRFKH IFRGQPRRHL 180 LTTGWSTFVT SKRLVAGDTF VFLRGSNGEL RVGVRRLTPV QNSMPSSVIS SQSMHLGVLA 240 TASHAVATQT LFVVYYKPRT SQFIVSVNKY LEAINQKCNV GMRLKTRSEG DDSTETDKRF 300 SGTIIGVEDI SPHWVNSKWR SLKVQWDEPP SFPRPDRVSP WEIEPILASV PTTISSQPVV 360 IKNKRPRQAS EVPDLGDTPL IAPTFWDAGL TQSDITQLGV MAESKRSESS AHMWHHNSSN 420 GISMNQIKAS WLSCPSHLYL DTTDDSKSVS ASPISKTHSE RLNNDHCLDQ VDKEISKVEP 480 ATGCRLFGID LIDHTRSSSL SVDNASGVTS EGRTDVNHEP DISKASKGWK QEQLQVSPKE 540 TQSKQICSRS CTKVQMQGVA VGRAVDLTTL DGYEKLVDEL EKMFDIKGQL RHRNKWEIVF 600 TDDEGDMMLV GDDPWPEFCN MVRRIFICSS QDVHKLSSGS KLPIFSTEEI VISSDTTEI* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-160 | 9 | 346 | 17 | 355 | Auxin response factor 1 |
4ldw_A | 1e-160 | 9 | 346 | 17 | 355 | Auxin response factor 1 |
4ldw_B | 1e-160 | 9 | 346 | 17 | 355 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Phvul.008G118400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007140507.1 | 0.0 | hypothetical protein PHAVU_008G118400g | ||||
Swissprot | Q9XED8 | 0.0 | ARFI_ARATH; Auxin response factor 9 | ||||
TrEMBL | V7B7Q4 | 0.0 | V7B7Q4_PHAVU; Auxin response factor | ||||
STRING | XP_007140507.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1511 | 33 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G23980.2 | 0.0 | auxin response factor 9 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Phvul.008G118400.1 |
Entrez Gene | 18622605 |