PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G107000.1
Common NamePHAVU_008G107000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB
Protein Properties Length: 287aa    MW: 32722.9 Da    PI: 8.7309
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G107000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.31.5e-072773246
                        SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                        g WT+eE +l+ +a + + ++   +W ++a++++ g+t  +++  ++ 
  Phvul.008G107000.1 27 GGWTAEENKLFENALAYYDKDtpdRWMRVAAMIP-GKTVGDVIQQYRE 73
                        56********************************.*******999986 PP
2Myb_DNA-binding46.21e-14135179347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         +WT+eE+ +++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky
  Phvul.008G107000.1 135 PWTEEEHRQFLLGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKY 179
                         8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.8E-42273IPR009057Homeodomain-like
PROSITE profilePS512938.5462479IPR017884SANT domain
SMARTSM007171.7E-72577IPR001005SANT/Myb domain
SuperFamilySSF466891.29E-112782IPR009057Homeodomain-like
PfamPF002493.9E-62773IPR001005SANT/Myb domain
CDDcd001671.24E-52974No hitNo description
PROSITE profilePS5129419.833128184IPR017930Myb domain
SuperFamilySSF466891.59E-17129183IPR009057Homeodomain-like
TIGRFAMsTIGR015574.9E-18131183IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.4E-12132179IPR009057Homeodomain-like
SMARTSM007176.2E-13132182IPR001005SANT/Myb domain
CDDcd001671.19E-10135180No hitNo description
PfamPF002493.7E-12135179IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MHRAIEALSP ASYLQNSNWL FQESKGGGWT AEENKLFENA LAYYDKDTPD RWMRVAAMIP  60
GKTVGDVIQQ YRELEEDVSV IEAGLIPVPG YTTSSFTLEW VNSQSYDEFK QFCSVGGKRG  120
ASTRPSEQER KKGVPWTEEE HRQFLLGLKK YGKGDWRNIS RNFVTTRTPT QVASHAQKYF  180
LRQLTGGKDK RRSSIHDITM VNLQETKSPS SDTTRPSSPL QNQKLCSMVK QEYDWKLPCN  240
DMPFVFNSTN GNMFMAAPLH GISSYESRPQ ELNILRQSPW MPVFTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-162494476RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00296DAPTransfer from AT2G38090Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G107000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007140381.10.0hypothetical protein PHAVU_008G107000g
SwissprotQ8S9H71e-107DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLV7B4700.0V7B470_PHAVU; Uncharacterized protein
STRINGXP_007140381.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46634162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-115MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]