PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.008G098900.1 | ||||||||
Common Name | PHAVU_008G098900g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | ERF | ||||||||
Protein Properties | Length: 158aa MW: 17505.3 Da PI: 9.4422 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.1 | 9.1e-18 | 33 | 82 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r +k +g+WvAeIr+p +kr r++lg++ t+ Aa+a++ a +l+g Phvul.008G098900.1 33 PYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYATPVAAARAYDTAVFYLRG 82 69*****99.**********9...336*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 5.56E-21 | 33 | 91 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.062 | 33 | 90 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.0E-38 | 33 | 96 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.0E-12 | 34 | 45 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.29E-28 | 34 | 92 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.1E-30 | 34 | 91 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.4E-11 | 34 | 82 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.0E-12 | 72 | 92 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 158 aa Download sequence Send to blast |
MEGEGLGDCC SSNSTTTRNS QKRKQQQQDQ DKPYRGIRMR KWGKWVAEIR EPNKRSRIWL 60 GSYATPVAAA RAYDTAVFYL RGPSARLNFP ELLSQDDDVS TQQGNMSADS IRKKATQVGA 120 RVDALQTALQ PSSSHSANSS HVSSDKPDLN EYPKPED* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-15 | 30 | 90 | 2 | 63 | ATERF1 |
3gcc_A | 2e-15 | 30 | 90 | 2 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.008G098900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KX151397 | 0.0 | KX151397.1 Phaseolus vulgaris genotype BAT 477 DREB5A protein (DREB5A) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007140279.1 | 1e-115 | hypothetical protein PHAVU_008G098900g | ||||
Swissprot | Q8LC30 | 4e-51 | RAP21_ARATH; Ethylene-responsive transcription factor RAP2-1 | ||||
TrEMBL | V7B5Z7 | 1e-113 | V7B5Z7_PHAVU; Uncharacterized protein | ||||
STRING | XP_007140279.1 | 1e-114 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1290 | 32 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67190.1 | 1e-48 | DREB and EAR motif protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.008G098900.1 |
Entrez Gene | 18622396 |
Publications ? help Back to Top | |||
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