PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.008G094800.1 | ||||||||
Common Name | PHAVU_008G094800g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | G2-like | ||||||||
Protein Properties | Length: 365aa MW: 40996.7 Da PI: 7.127 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 102.3 | 3.1e-32 | 68 | 121 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH rFv+av++LGG+e+AtPk +l+lm++kgL+++hvkSHLQ+YR+ Phvul.008G094800.1 68 PRLRWTPDLHLRFVHAVQRLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRS 121 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.929 | 64 | 124 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-29 | 64 | 122 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.2E-14 | 67 | 122 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.6E-23 | 68 | 123 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.4E-9 | 69 | 120 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
MVMRMEEERH VSECSKTSPS NEEVCEESDE ENEDGSKRNN NGGSSSNSTV EENEKKATVR 60 PYVRSKLPRL RWTPDLHLRF VHAVQRLGGQ ERATPKLVLQ LMNIKGLSIA HVKSHLQMYR 120 SKKVEANQVL GDPRLLVETG DRNVYNLSQI PMLQGYNPSQ TSTFRYGYGD ASLAIYENMV 180 KRPCPNRSSA DEPGAEFCGS KLTERTHGTN SNINWSHNML QVDCSSFNEP STNKVHEPKH 240 KFFSIGGNES LCTQIKMSQD DLHQMQPSAQ ELMPNNKMTA NQMELNSLKR KASDTDIDLN 300 LSLKLSSRIS GDDRGSMVDH EIDSNLSLSL CSQSSSSYLS SRLRKSQDHS KEQGERARTL 360 DLTI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-17 | 69 | 123 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-17 | 69 | 123 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 1e-17 | 69 | 123 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-17 | 69 | 123 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-17 | 69 | 123 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-17 | 69 | 123 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-17 | 69 | 123 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-17 | 69 | 123 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-17 | 69 | 123 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-17 | 69 | 123 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-17 | 69 | 123 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-17 | 69 | 123 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00297 | DAP | Transfer from AT2G38300 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.008G094800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 1e-110 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007140226.1 | 0.0 | hypothetical protein PHAVU_008G094800g | ||||
TrEMBL | V7B3U5 | 0.0 | V7B3U5_PHAVU; Uncharacterized protein | ||||
STRING | XP_007140226.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2378 | 34 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38300.1 | 2e-51 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.008G094800.1 |
Entrez Gene | 18622349 |