PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.008G087200.1

Common Name

PHAVU_008G087200g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

bHLH

Protein Properties

Length: 152aa MW: 16661.9 Da PI: 4.5353

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.008G087200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.7	0.00024	7	43	19	54
HHHHHHCTSCCC....TTS-STCHHHHHHHHHHHHHH CS HLH 19 afeeLrellPkas.kapskKlsKaeiLekAveYIksL 54 +++ L + l ++ ++s+ l+Ka+i A +YI +L Phvul.008G087200.1 7 RIASLEQTLQQLRdVTNSTALNKASIIVDASKYIEEL 43 56666666666443678888**************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.27E-5	6	58	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.5E-5	14	54	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS51671	9.346	82	151	IPR002912	ACT domain
CDD	cd04873	4.73E-4	88	147	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008152	Biological Process	metabolic process
GO:0016597	Molecular Function	amino acid binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 152 aa Download sequence Send to blast
MAFRDKRIAS LEQTLQQLRD VTNSTALNKA SIIVDASKYI EELKQKVEGL NSELGITESS 60 SNSQIDELPT VTVKTLKKGF LINVLLEKNS PGMLVSILEA FEELGLDVLD ARVSCEDSFQ 120 LEAVGRESHK NDSVDAQVVK QAVLRAIKNE D*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.008G087200.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT092309	0.0	BT092309.1 Soybean clone JCVI-FLGm-10J13 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007140138.1	1e-104	hypothetical protein PHAVU_008G087200g
TrEMBL	V7B2L6	1e-103	V7B2L6_PHAVU; Uncharacterized protein
STRING	XP_007140138.1	1e-104	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF724	10	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12860.1	8e-11	bHLH family protein

Link Out ? help Back to Top
Phytozome	Phvul.008G087200.1
Entrez Gene	18622271