PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.008G042200.1 | ||||||||
Common Name | PHAVU_008G042200g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 269aa MW: 30704.3 Da PI: 6.5838 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.7 | 2e-18 | 80 | 132 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + +++ eql++Le+ Fe +++ e++ +LAk lgL+ rq+ +WFqNrRa++k Phvul.008G042200.1 80 KKRLNLEQLKALEKSFELANKLEPERKVQLAKALGLQPRQIAIWFQNRRARWK 132 4568889*********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 121.5 | 4.4e-39 | 78 | 170 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekk+rl+ eq+k+LE+sFe +kLeperKv+la++Lglqprq+a+WFqnrRAR+ktkqlEk+yeaLk++++ k++n+ L+ ++++L++el Phvul.008G042200.1 78 EKKKRLNLEQLKALEKSFELANKLEPERKVQLAKALGLQPRQIAIWFQNRRARWKTKQLEKEYEALKKQFEGAKADNDVLKIQNQKLQAEL 168 69***************************************************************************************99 PP HD-ZIP_I/II 92 ke 93 ++ Phvul.008G042200.1 169 EA 170 75 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.56E-19 | 73 | 136 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.584 | 74 | 134 | IPR001356 | Homeobox domain |
SMART | SM00389 | 9.8E-17 | 77 | 138 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.19E-16 | 79 | 135 | No hit | No description |
Pfam | PF00046 | 2.1E-15 | 80 | 132 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 9.9E-19 | 82 | 142 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 9.0E-6 | 105 | 114 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 109 | 132 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 9.0E-6 | 114 | 130 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 5.3E-10 | 134 | 173 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MAFPPSHSFT FHTHEEDHHH LPSTSLNAYP SFPPQHFQGG APPFMLKRSM SFSGIENKCD 60 EVNGDDELSD DGNFQCGEKK KRLNLEQLKA LEKSFELANK LEPERKVQLA KALGLQPRQI 120 AIWFQNRRAR WKTKQLEKEY EALKKQFEGA KADNDVLKIQ NQKLQAELEA VKSRGWCEAG 180 TISLKKETEG SWSNGSENSS DINLDLSRTP ILNNPTSCQA PFPTSITQIL QYSSKPDFQD 240 DDFCNVIHNI DVQQNFWPWP GQQNHHFH* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 126 | 134 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.008G042200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 1e-179 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007139587.1 | 0.0 | hypothetical protein PHAVU_008G042200g | ||||
Swissprot | Q00466 | 1e-73 | HAT7_ARATH; Homeobox-leucine zipper protein HAT7 | ||||
TrEMBL | V7B542 | 0.0 | V7B542_PHAVU; Uncharacterized protein | ||||
STRING | XP_007139587.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1271 | 33 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15150.1 | 3e-66 | homeobox 3 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.008G042200.1 |
Entrez Gene | 18621812 |