PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G041300.1
Common NamePHAVU_008G041300g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ZF-HD
Protein Properties Length: 327aa    MW: 35268.9 Da    PI: 7.805
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G041300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer107.67.4e-3464120358
         ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 
                         +v+YkeClkNhAa+lGgha+DGCgEfmps++++ ++++++kCaACgCHRnFHRre++
  Phvul.008G041300.1  64 AVTYKECLKNHAANLGGHALDGCGEFMPSPTATaADPSSIKCAACGCHRNFHRREPD 120
                         799***************************99999*******************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257741.0E-2365118IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047706.1E-2865119IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.7E-3066118IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.13767118IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466893.84E-19190259IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.0E-30192260IPR009057Homeodomain-like
TIGRFAMsTIGR015655.3E-27198255IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MDITPTTTIN NTTPSATTKS PDHDTETPTR INTPTATKAL SFSNGVLKRH HHHHHHHHHP  60
MSAAVTYKEC LKNHAANLGG HALDGCGEFM PSPTATAADP SSIKCAACGC HRNFHRREPD  120
EPPIASTTHV IEYQPHHRHH PPPPFQAAVA ANRSPNSASP PPISSSYYPS APHMLLALSA  180
GLAAPPESTA APSTALTRKR FRTKFSQEQK EKMHKFADKV GWKMQKRDED LVHEFCNEIG  240
VDRSVLKVWM HNNKNTLAKK DNNVNITSND DITNNINDND ANGAAKGFED PNSSIGGGAE  300
DRGEDPSRNH FGGVNVGGAN GSSSTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-211972561675ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G041300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007139577.10.0hypothetical protein PHAVU_008G041300g
SwissprotQ9LXG03e-76ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLV7B5310.0V7B531_PHAVU; Uncharacterized protein
STRINGXP_007139577.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19793188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.15e-64homeobox protein 34
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]