PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.008G039300.1 | ||||||||
Common Name | PHAVU_008G039300g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | ERF | ||||||||
Protein Properties | Length: 402aa MW: 45535.3 Da PI: 4.3188 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60 | 5.5e-19 | 42 | 91 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +grWvAeI+d ++ r++lg+f+taeeAa+a+++a+ l+g Phvul.008G039300.1 42 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 91 789******.7*********33....35**********************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.43E-32 | 41 | 98 | No hit | No description |
Pfam | PF00847 | 9.9E-14 | 42 | 91 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.5E-36 | 42 | 105 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.53E-19 | 42 | 99 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.9E-27 | 42 | 98 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.559 | 42 | 99 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.8E-8 | 43 | 54 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.8E-8 | 65 | 81 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 402 aa Download sequence Send to blast |
MARKRKVSEE VEERNPSEET MAWDEVMKEA AALGSGRRLR KRFVGVRQRP SGRWVAEIKD 60 TIQKIRVWLG TFDTAEEAAR AYDEAACLLR GANTRTNFWP TSQSSSTPAL PSKITNLLLQ 120 RLKARNNNTR TNPCTLSSSS SSTSLSINQQ QSQQEDVRGA ESTYFTLDQF SDFLNDSEDY 180 STNNNEFSND SAQIDCITSS LESCLNENDD CREKEKEMEM EFDFNSVTQT SSADIKEDNE 240 EGTDLSTQDF QFLDNVVPSS YHYSLFEITE EIEEQLEPEN YGDEPSILRE VMKRMKYERK 300 SSASLYTFNG IPECLKLKLE SGNKNRGGVC ISNQLTNLKM ACSKNKIEGI EKNEEYIEAM 360 DMKEPQTSVG MDCSFPSFSS SIDDELLLWN SLDLPTIFCV N* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.008G039300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007139548.1 | 0.0 | hypothetical protein PHAVU_008G039300g | ||||
TrEMBL | V7B0W2 | 0.0 | V7B0W2_PHAVU; Uncharacterized protein | ||||
STRING | XP_007139548.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3338 | 32 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 2e-22 | related to AP2 11 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.008G039300.1 |
Entrez Gene | 18621783 |