PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.008G012500.1 | ||||||||
Common Name | PHAVU_008G012500g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | Dof | ||||||||
Protein Properties | Length: 351aa MW: 37827.4 Da PI: 9.4116 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 124.9 | 2.6e-39 | 72 | 132 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++alkcprC+s+ntkfCyynnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+s+ Phvul.008G012500.1 72 PDAALKCPRCESANTKFCYYNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSK 132 68899*****************************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-32 | 56 | 125 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.7E-33 | 74 | 130 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.59 | 76 | 130 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 78 | 114 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
MVFPSLPIYL DPPNWSQQQP NRPAGIGIQT PPPLQSPPSS MTAVIGGGGG YQGSIRPGSM 60 ADRARMAKIH QPDAALKCPR CESANTKFCY YNNYSLSQPR HFCKTCRRYW TRGGALRNVP 120 VGGGCRRNKR SKGSNGRSKS PMKPSTGSNS SSSGCTTDHV MMATQTQFPF LTSLHHYNSD 180 YVSGGIGSHF GAITTPLVAR NDSDLEFQIG TSSASSLGNS GGDMLSNGLA EQWRLNNLQQ 240 VQQQFPFLST NLEPQIGLFQ FGGGENNNAE PPSYAKDGGR FNIRSKLDSI SSLSGIMPQI 300 NTIKMEESQG LSLPKNLLMG SSGNDVLWNN GSGNAWSELP CFTPSHNHFL * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.008G012500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 1e-172 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007139234.1 | 0.0 | hypothetical protein PHAVU_008G012500g | ||||
TrEMBL | V7B2Z0 | 0.0 | V7B2Z0_PHAVU; Uncharacterized protein | ||||
STRING | XP_007139234.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF656 | 34 | 143 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37590.1 | 2e-41 | DNA binding with one finger 2.4 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.008G012500.1 |
Entrez Gene | 18621511 |