PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.008G005500.1 | ||||||||
Common Name | PHAVU_008G005500g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | LBD | ||||||||
Protein Properties | Length: 303aa MW: 33008.3 Da PI: 8.0945 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 100.2 | 2e-31 | 4 | 107 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +C++C+vlr++C+++C ++p++ p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg+++++++q Phvul.008G005500.1 4 SCNGCRVLRKGCSENCSIRPCLqwiksPESQANATVFLAKFYGRAGLMNLVNAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQ 94 6****************************************************************************************** PP DUF260 87 leqlkaelallke 99 l+q+++e +l+++ Phvul.008G005500.1 95 LCQAAVENVLRGA 107 *****99988765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038155 | 6.1E-99 | 1 | 302 | IPR017414 | LOB domain-containing protein 10/36/41 |
PROSITE profile | PS50891 | 16.936 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.8E-25 | 4 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MRMSCNGCRV LRKGCSENCS IRPCLQWIKS PESQANATVF LAKFYGRAGL MNLVNAGPEH 60 LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQAAV ENVLRGAPIT PITSEAAASG 120 RGPPLKAYDI RHVSKDENSA ASNETQQQRV KTRSRVRRPL ANANAKPKST SNDNNGNKGT 180 ELGLSEPGLM TCEWTEEVLN RSGSHDSSLS HQSEAANAVE SESMVSVETA ETSILFRDEP 240 ESNRKLVRRT DDVGLELTLG FEPVSRAQHV VPVKKRRIEL KEFSGSAESE SCKMELGLEC 300 SA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.008G005500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007139150.1 | 0.0 | hypothetical protein PHAVU_008G005500g | ||||
Swissprot | Q9M886 | 1e-107 | LBD41_ARATH; LOB domain-containing protein 41 | ||||
TrEMBL | V7B018 | 0.0 | V7B018_PHAVU; Uncharacterized protein | ||||
STRING | XP_007139150.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1546 | 34 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 1e-101 | LOB domain-containing protein 41 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.008G005500.1 |
Entrez Gene | 18621439 |