PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G278200.1
Common NamePHAVU_007G278200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family HSF
Protein Properties Length: 335aa    MW: 38667.4 Da    PI: 4.5444
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G278200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.52.8e-35371292103
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+y+i++d ++++++sws+++nsfvv+d++ f+ ++LpkyFkh+nf+SFvRQLn+YgFkkv+ ++         weF+++ F +g+++
  Phvul.007G278200.1  37 FLTKTYDIVDDVSTDDIVSWSRENNSFVVWDPQAFSITLLPKYFKHNNFSSFVRQLNTYGFKKVDPDK---------WEFANEGFLRGQRH 118
                         9*********************99*****************************************999.........************** PP

                         XXXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkkse 103
                         ll+ i+r+k++
  Phvul.007G278200.1 119 LLKIIRRRKTT 129
                         ********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.8E-3830120IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.4E-3432126IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.5E-5833126IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-193760IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.1E-3037126IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-197587IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434076100IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-1988100IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MSCVDDGPVI VKEEVHGEGF VAPQPLEGLH ESGPPPFLTK TYDIVDDVST DDIVSWSREN  60
NSFVVWDPQA FSITLLPKYF KHNNFSSFVR QLNTYGFKKV DPDKWEFANE GFLRGQRHLL  120
KIIRRRKTTH QPQPPQQSLD HCVEVLDGEM DGLRREKQVL MVELVKLRQQ QQNTKDHLQS  180
MENRLKKTEQ KQQQTMKFLA RIMQNPNFLQ QLVQQREWRK ELEEAFSNKR RRAIDEGHND  240
AEECSGLVKL EQEECTEISE LEVSDIELAM NIQSESQKKT CGEELESRNG GIEEVLLEEL  300
LNEGVEEDLL ALENDDNEDI ILLSQELGYL ASKS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-243212912123Heat shock factor protein 1
5d5u_B4e-242812817131Heat shock factor protein 1
5d5v_B4e-242812817131Heat shock factor protein 1
5d5v_D4e-242812817131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G278200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-150AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007145912.10.0hypothetical protein PHAVU_007G278200g
SwissprotQ9LUH81e-119HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLV7BMV00.0V7BMV0_PHAVU; Uncharacterized protein
STRINGXP_007145912.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-101heat shock transcription factor A6B