PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G259300.1
Common NamePHAVU_007G259300g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C3H
Protein Properties Length: 294aa    MW: 30682.2 Da    PI: 9.7498
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G259300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.42.9e-09100125227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         kt++C+ f     Ck+Gd+C+FaHg+
  Phvul.007G259300.1 100 KTRICNKFNTAEGCKFGDKCHFAHGE 125
                         8***********************96 PP
2zf-CCCH375.8e-12260284126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         +kt+lC +fa+ G C +GdrC+FaHg
  Phvul.007G259300.1 260 FKTKLCENFAK-GSCTFGDRCHFAHG 284
                         69*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.0423462IPR000571Zinc finger, CCCH-type
SMARTSM003564.83461IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.94E-63560IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-73659IPR000571Zinc finger, CCCH-type
PfamPF146081.64259No hitNo description
Gene3DG3DSA:4.10.1000.102.2E-1496129IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-897129IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.6198126IPR000571Zinc finger, CCCH-type
SMARTSM003566.6E-498125IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-6100125IPR000571Zinc finger, CCCH-type
SuperFamilySSF547911.75E-15155236IPR004088K Homology domain, type 1
SMARTSM003224.9E-12165235IPR004087K Homology domain
PROSITE profilePS5008414.739166230IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.104.0E-16167234IPR004088K Homology domain, type 1
CDDcd001057.50E-15168231No hitNo description
PfamPF000135.4E-12168231IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.101.9E-16255290IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.11E-8259289IPR000571Zinc finger, CCCH-type
SMARTSM003569.7E-8259285IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.352259286IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-9260284IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MDLRKRGRPE PAVSLNGAVK KTKQDLESLS GGVGSKSKPC TKFFSTAGCP FGEGCHFLHY  60
VPGGYNAVAH MMNLKPAAPP PRAVAAPPPV PNGSAPSAVK TRICNKFNTA EGCKFGDKCH  120
FAHGEWELGK PIAPSIDDHR PLGPPAAGRM SGRIEPPPLA GSFGAISTAK ISVEASLAGA  180
IIGKGGVNSK QICRQTGAKL SIREHETDPN LRNIELEGTF EQIKEASNMV KDLLLTVSMS  240
APPKSNPGVP GAPAPPGSNF KTKLCENFAK GSCTFGDRCH FAHGAGELRK QGV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G259300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007145681.10.0hypothetical protein PHAVU_007G259300g
SwissprotQ7F8R01e-112C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLV7BKW00.0V7BKW0_PHAVU; Uncharacterized protein
STRINGXP_007145681.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF146232102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.14e-61C3H family protein