PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Phvul.007G258400.2 | ||||||||
Common Name | PHAVU_007G258400g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
|
||||||||
Family | SBP | ||||||||
Protein Properties | Length: 368aa MW: 39509.6 Da PI: 8.5725 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 135.4 | 1.7e-42 | 77 | 153 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqv+gC++dls ak y++rhkvC +hsk+p+v+v+ leqrfCqqCsrfh+lsefD++krsCrrrLa+hnerrrk+ Phvul.007G258400.2 77 RCQVQGCNVDLSGAKAYYSRHKVCAMHSKSPTVIVASLEQRFCQQCSRFHMLSEFDQGKRSCRRRLAGHNERRRKPP 153 6**************************************************************************85 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.4E-33 | 70 | 139 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.539 | 75 | 152 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.44E-39 | 76 | 157 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 3.8E-32 | 78 | 151 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 368 aa Download sequence Send to blast |
MSSGSVTNAP PSSSSSPNSS TESPDGLKFG QKIYFEDVSV AAAATTQGTK TSGGISSSSS 60 SSKKGRGGSA QPAQPSRCQV QGCNVDLSGA KAYYSRHKVC AMHSKSPTVI VASLEQRFCQ 120 QCSRFHMLSE FDQGKRSCRR RLAGHNERRR KPPPSSIFTS RYGRLSSPIF DNNGRAGSFL 180 MEFASYPKLS LRNTLPTPRS DEPLPGNHAA ALTWQGSSET ASEFFLHGSG SGGTSFLGSK 240 HPLMESYTTD SNCALSLLSN QTWGSRTTQP SVELNNNNHN LLNFNGSSMA QFTAASSQVA 300 AMHQLPNATS WYLKAVDSPE DVPDLGLGQI SPSLHSHLHG ELDVPHQGRH YMDLEESRAC 360 ESSHWSL* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 6e-30 | 78 | 151 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Phvul.007G258400.2 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007145669.1 | 0.0 | hypothetical protein PHAVU_007G258400g | ||||
Swissprot | A3C057 | 8e-60 | SPL17_ORYSJ; Squamosa promoter-binding-like protein 17 | ||||
TrEMBL | V7BKX0 | 0.0 | V7BKX0_PHAVU; Uncharacterized protein | ||||
STRING | XP_007145670.1 | 0.0 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G42200.1 | 6e-48 | squamosa promoter binding protein-like 9 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Phvul.007G258400.2 |
Entrez Gene | 18627066 |