PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G258400.1
Common NamePHAVU_007G258400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family SBP
Protein Properties Length: 369aa    MW: 39580.7 Da    PI: 8.5725
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G258400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP135.41.7e-4277153177
                         --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                 SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                         +Cqv+gC++dls ak y++rhkvC +hsk+p+v+v+ leqrfCqqCsrfh+lsefD++krsCrrrLa+hnerrrk+ 
  Phvul.007G258400.1  77 RCQVQGCNVDLSGAKAYYSRHKVCAMHSKSPTVIVASLEQRFCQQCSRFHMLSEFDQGKRSCRRRLAGHNERRRKPP 153
                         6**************************************************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.4E-3370139IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.53975152IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.44E-3976157IPR004333Transcription factor, SBP-box
PfamPF031103.8E-3278151IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MSSGSVTNAP PSSSSSPNSS TESPDGLKFG QKIYFEDVSV AAAATTQGTK TSGGISSSSS  60
SSKKGRGGSA QPAQPSRCQV QGCNVDLSGA KAYYSRHKVC AMHSKSPTVI VASLEQRFCQ  120
QCSRFHMLSE FDQGKRSCRR RLAGHNERRR KPPPSSIFTS RYGRLSSPIF ADNNGRAGSF  180
LMEFASYPKL SLRNTLPTPR SDEPLPGNHA AALTWQGSSE TASEFFLHGS GSGGTSFLGS  240
KHPLMESYTT DSNCALSLLS NQTWGSRTTQ PSVELNNNNH NLLNFNGSSM AQFTAASSQV  300
AAMHQLPNAT SWYLKAVDSP EDVPDLGLGQ ISPSLHSHLH GELDVPHQGR HYMDLEESRA  360
CESSHWSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A6e-30781511184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G258400.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007145670.10.0hypothetical protein PHAVU_007G258400g
SwissprotA3C0578e-59SPL17_ORYSJ; Squamosa promoter-binding-like protein 17
TrEMBLV7BIB80.0V7BIB8_PHAVU; Uncharacterized protein
STRINGXP_007145670.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42083359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.12e-47squamosa promoter binding protein-like 9