PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G222300.1
Common NamePHAVU_007G222300g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family GRF
Protein Properties Length: 326aa    MW: 36596.1 Da    PI: 8.4001
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G222300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC789.5e-25138183146
                 WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskees 46 
                         d+epgrCrRtDGKkWRCsr++++++k+C+rH+hrgr+rsrk++e+s
  Phvul.007G222300.1 138 DPEPGRCRRTDGKKWRCSREAMDDQKYCQRHMHRGRNRSRKPVEQS 183
                         79****************************************9975 PP
2QLQ43.21.2e-1573108237
                 QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                          F+ aQ q+L+ Q l+++y+ a +PvPp+Llq+i+k
  Phvul.007G222300.1  73 CFSFAQRQELELQSLIFRYMQADAPVPPQLLQPIKK 108
                         6*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009515.4E-572108IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166618.25673108IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088806.9E-1174106IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.164138182IPR014977WRC domain
PfamPF088794.0E-21139181IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MDLQLKQWRN HHESEQQHSP NMPKFLPQHH PPPACAALPL FLPQPSTKVI ILPSFSDSTL  60
PSAPPRFPRK ESCFSFAQRQ ELELQSLIFR YMQADAPVPP QLLQPIKKSF LHYPPLFLHL  120
YHPALLESGY YWRREAEDPE PGRCRRTDGK KWRCSREAMD DQKYCQRHMH RGRNRSRKPV  180
EQSNAPSSSP SPFFKHHHLL HLNQSSSGAK SDSKSLSENH DPVDGDGRSG GHVLRHFFDD  240
LPRTLPEPDH GENNGIQSNN NGTYLSMSTP GITSSDVSLK LSTGHASMEG PLAEALRSST  300
STSSPTSVLL QLPTSSACET NFISM*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G222300.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150412e-72AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
GenBankAP0157462e-72AP015746.1 Vigna angularis var. angularis DNA, scaffold: Scaffold_0702, complete sequence, cultivar: Shumari.
GenBankAP0160852e-72AP016085.1 Vigna angularis var. angularis DNA, scaffold: Scaffold_1041, complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007145239.10.0hypothetical protein PHAVU_007G222300g
SwissprotQ8L8A73e-63GRF4_ARATH; Growth-regulating factor 4
TrEMBLV7BJM40.0V7BJM4_PHAVU; Uncharacterized protein
STRINGXP_007145239.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF78953242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52910.13e-45growth-regulating factor 4
Publications ? help Back to Top
  1. Kuijt SJ, et al.
    Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX families of transcription factors.
    Plant Physiol., 2014. 164(4): p. 1952-66
    [PMID:24532604]
  2. Cao Y,Han Y,Jin Q,Lin Y,Cai Y
    Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa).
    Front Plant Sci, 2016. 7: p. 1750
    [PMID:27933074]