PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G217800.2
Common NamePHAVU_007G217800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 300aa    MW: 33667.5 Da    PI: 5.5301
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G217800.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.2e-1974122355
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a+++ ++k++g
  Phvul.007G217800.2  74 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDREARKIRG 122
                         9*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.77573130IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-2273131IPR016177DNA-binding domain
SMARTSM003801.8E-3873136IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-3273131IPR001471AP2/ERF domain
PfamPF008476.0E-1274122IPR001471AP2/ERF domain
CDDcd000184.79E-3374131No hitNo description
PRINTSPR003677.6E-127485IPR001471AP2/ERF domain
PRINTSPR003677.6E-1296112IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MCGGAIIADF IPRRGRCVAA SELWPNSFGK DDDFAFGYSN IAKQEPSTLK TAQPPKVSEK  60
VETKPMKRQR KNLYRGIRQR PWGKWAAEIR DPRKGVRVWL GTFNTAEEAA RAYDREARKI  120
RGKKAKVNFP NEDDDYSIQA RNPIPPLPFA TQNAAPYQQQ YRCDLNNAPS NLNFEFGYDL  180
NHTGAFSSHV DAVKADSVVV SGDENSGLAS GSEGAHSTSE FMGSCQKVNG YFSSTVVEKE  240
KEIEVIGAEE EKNKLQELSE ELMAYENYMK FYQIPYYDGQ SMPPNNVQES IVGDLWNFD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-2274130360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A2e-21741321574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G217800.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007145186.10.0hypothetical protein PHAVU_007G217800g
RefseqXP_007145187.10.0hypothetical protein PHAVU_007G217800g
TrEMBLV7BJH50.0V7BJH5_PHAVU; Uncharacterized protein
STRINGXP_007145186.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.14e-38ethylene-responsive element binding protein