PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.007G217800.1 | ||||||||
Common Name | PHAVU_007G217800g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | ERF | ||||||||
Protein Properties | Length: 300aa MW: 33667.5 Da PI: 5.5301 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.1 | 5.2e-19 | 74 | 122 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r+++ +g+W+AeIrdp++ r++lg+f taeeAa+a+++ ++k++g Phvul.007G217800.1 74 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDREARKIRG 122 9*******.**********954...4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 23.775 | 73 | 130 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.35E-22 | 73 | 131 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.8E-38 | 73 | 136 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.0E-32 | 73 | 131 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.0E-12 | 74 | 122 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.79E-33 | 74 | 131 | No hit | No description |
PRINTS | PR00367 | 7.6E-12 | 74 | 85 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.6E-12 | 96 | 112 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MCGGAIIADF IPRRGRCVAA SELWPNSFGK DDDFAFGYSN IAKQEPSTLK TAQPPKVSEK 60 VETKPMKRQR KNLYRGIRQR PWGKWAAEIR DPRKGVRVWL GTFNTAEEAA RAYDREARKI 120 RGKKAKVNFP NEDDDYSIQA RNPIPPLPFA TQNAAPYQQQ YRCDLNNAPS NLNFEFGYDL 180 NHTGAFSSHV DAVKADSVVV SGDENSGLAS GSEGAHSTSE FMGSCQKVNG YFSSTVVEKE 240 KEIEVIGAEE EKNKLQELSE ELMAYENYMK FYQIPYYDGQ SMPPNNVQES IVGDLWNFD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 7e-22 | 74 | 130 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
5wx9_A | 2e-21 | 74 | 132 | 15 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.007G217800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007145186.1 | 0.0 | hypothetical protein PHAVU_007G217800g | ||||
Refseq | XP_007145187.1 | 0.0 | hypothetical protein PHAVU_007G217800g | ||||
TrEMBL | V7BJH5 | 0.0 | V7BJH5_PHAVU; Uncharacterized protein | ||||
STRING | XP_007145186.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6771 | 34 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16770.1 | 4e-38 | ethylene-responsive element binding protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.007G217800.1 |
Entrez Gene | 18626646 |