PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G211900.1
Common NamePHAVU_007G211900g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB
Protein Properties Length: 282aa    MW: 31913.6 Da    PI: 5.6612
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G211900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.75.6e-183178148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g WT+eEd ll+++v++lG g+W++ a   g++Rt+k+c++rw++yl
  Phvul.007G211900.1 31 KGTWTEEEDSLLINYVNLLGEGHWNSLAISAGLKRTGKSCRLRWLNYL 78
                        799*******************************************97 PP
2Myb_DNA-binding46.77.4e-1584127146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg+ T +E++l+++++ ++G++ W++Ia+ ++ gRt++++k++w++
  Phvul.007G211900.1  84 RGNITLQEQLLILELHSRWGNR-WAKIAEQLP-GRTDNEIKNYWRT 127
                         7899******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.942682IPR017930Myb domain
SMARTSM007176.1E-153080IPR001005SANT/Myb domain
SuperFamilySSF466893.37E-2930125IPR009057Homeodomain-like
PfamPF002491.1E-163178IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-203285IPR009057Homeodomain-like
CDDcd001675.10E-113378No hitNo description
PROSITE profilePS5129418.17483133IPR017930Myb domain
SMARTSM007173.5E-1383131IPR001005SANT/Myb domain
PfamPF002497.0E-1484127IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.4E-2186131IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
METMSVRVMR SLSDTELSAK YGSEEEIVIK KGTWTEEEDS LLINYVNLLG EGHWNSLAIS  60
AGLKRTGKSC RLRWLNYLRP NVRRGNITLQ EQLLILELHS RWGNRWAKIA EQLPGRTDNE  120
IKNYWRTRVV KQAKQLKCDV NSKQFRDAVR FVWMPRLMER IQASSGNASS SYGHDQTTLC  180
NTQTHGESSG ANPMMFCDSS MISSYASGVD VQPPSLSDAS TTSSCNLMGD GSCSSDSAQK  240
GWQQWDYSDL QAFEQNHGFG DADLWTDENM WFLQQHLADD F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C8e-2481254120MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G211900.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007145122.10.0hypothetical protein PHAVU_007G211900g
SwissprotQ10MB43e-76MYB2_ORYSJ; Transcription factor MYB2
TrEMBLV7BKM50.0V7BKM5_PHAVU; Uncharacterized protein
STRINGXP_007145122.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87534125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.11e-69myb domain protein 78
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  4. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  5. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]