PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G210600.1
Common NamePHAVU_007G210600g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family SBP
Protein Properties Length: 1015aa    MW: 112505 Da    PI: 6.1242
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G210600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.11.7e-40155232178
                         --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                 SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                         +Cqve+C+adls+ak+yhrrhkvCe+hska+ +lv + +qrfCqqCsrfh+l+efDe+krsCrrrLa+hn+rrrk+++
  Phvul.007G210600.1 155 VCQVEDCSADLSKAKDYHRRHKVCEMHSKASRALVGNAMQRFCQQCSRFHMLQEFDEGKRSCRRRLAGHNKRRRKTNH 232
                         6**************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.8E-33149217IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.146153230IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.01E-37154234IPR004333Transcription factor, SBP-box
PfamPF031103.4E-29156229IPR004333Transcription factor, SBP-box
SuperFamilySSF484038.86E-8781900IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.4E-6787902IPR020683Ankyrin repeat-containing domain
CDDcd002047.25E-7788899No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1015 aa     Download sequence    Send to blast
MEARFGAEAY HLFGVGASSD LRGVGKRSSE WDLNDWRWDG DLFIASRLNP VPADGVGVGQ  60
QFFPLGSGIP VAGGPSNSSS CSEEVDPRDP MGSKEGDKKR RVIVLEDDGL NEETGTLSLK  120
LGGHASAVVD REVASWDGMN GKKSRVSGST SNRAVCQVED CSADLSKAKD YHRRHKVCEM  180
HSKASRALVG NAMQRFCQQC SRFHMLQEFD EGKRSCRRRL AGHNKRRRKT NHEPVPNGSS  240
LNDDQTSSYL LISLLKILSN MHSDRSDQTT DQDLLTHILR SLASQNGEQG GKNISNLLRE  300
PENLLIEGDS SRKSEMVSTL FSNGSQGSPT VTRQHEAVSM AKLQQQVMHA HDARASEQQI  360
TSSIKPSMSN SPPAYSEARD STSGQIKMNN FDLNDIYIDS DDGMEDLERL PVSANLVTSS  420
LDYPWAQQDS HHSSPPQTSG NSDSASAQSP SSSSGEAQSR TDRIVFKLFG KEPNDFPLVL  480
RAQILDWLSH SPTDMESYIR PGCIVLTIYL RQAEALWEEL CYDLTSSLNR LLDVSDDTFW  540
RNGWVHIRVQ HQMAFIFNGQ VVIDTSLPFR SNNYSKILTV SPIAVPASKR AQFSVKGVNL  600
MCPATRLMCA VEGKYVVCED AHMSMDQCAK EPDELQCIQF SCSVPVMNGR GFIEIEDQSL  660
SSSFFPFIVV EEEDVCSEIC TLEPLLEISE TDPDIEGTGK VKAKNQAMDF IHEMGWLLHR  720
SQLKLRMVHL NSSVELYPLK RFKWLMEFSM DHDWCAAVKK LLNLLLDGTV NIGDHPSLYL  780
ALSEMGLLHK AVRRNSKQLV ELLLGYVPEN VSDELEPEVK ALVDGENKTF LFRPDVVGPA  840
GLTPLHIAAG KDGSEDVLDA LTNDPCMVGI EAWKNARDST GSTPEDYARL RGHYAYIHLV  900
QKKINKRHGA AHVVVEIPSN TTESNTNQKQ NEASSSFEIG KPAVRLSQRP CKLCDSKMFC  960
RTAVGKSMVY RPAMLSMVAI AAVCVCVALL FKSSPEVICM FRPFRWETLD FGTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-31147229384squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:16095614}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00633PBMTransfer from PK06791.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G210600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007145109.10.0hypothetical protein PHAVU_007G210600g
SwissprotQ9SMX90.0SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBLV7BJ980.0V7BJ98_PHAVU; Uncharacterized protein
STRINGXP_007145109.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15393495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.10.0squamosa promoter binding protein-like 1
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Chao LM, et al.
    Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage.
    Mol Plant, 2017. 10(5): p. 735-748
    [PMID:28400323]