PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.007G203900.1

Common Name

PHAVU_007G203900g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

C3H

Protein Properties

Length: 126aa MW: 14241 Da PI: 8.4889

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.007G203900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.9	3.5e-08	52	75	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +lC +f+ tG+C+yG +Ck+ H+ Phvul.007G203900.1 52 PPLCFHFLNTGFCRYGHSCKYLHP 75 689********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00451	0.0014	3	38	IPR003604	Zinc finger, U1-type
Pfam	PF06220	8.4E-11	4	39	IPR013085	Zinc finger, U1-C type
SuperFamily	SSF57667	5.06E-15	4	49	No hit	No description
SuperFamily	SSF90229	5.65E-7	49	77	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.939	49	77	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.9E-4	49	76	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.3E-6	52	75	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.4E-6	54	74	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 126 aa Download sequence Send to blast
MPAKKYYCDY CDKQFQDTPA DRKRHVQGIQ HQQAKARWYD SFNQHHQQIP NPPLCFHFLN 60 TGFCRYGHSC KYLHPTPNNT TQHAPIPSPV VHAGNVVGLS LGNLPPSLQP PPEAGYPHLP 120 FVDWG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.007G203900.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	1e-71	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007145029.1	1e-89	hypothetical protein PHAVU_007G203900g
Swissprot	Q0JP11	2e-35	C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBL	V7BJ32	2e-88	V7BJ32_PHAVU; Uncharacterized protein
STRING	XP_007145029.1	4e-89	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11959	28	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26749.1	2e-34	C3H family protein

Link Out ? help Back to Top
Phytozome	Phvul.007G203900.1
Entrez Gene	18626504

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]