PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G193400.1
Common NamePHAVU_007G193400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 148aa    MW: 16597.4 Da    PI: 5.7024
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G193400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.91.5e-191465256
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                        +y+G+r+++ +g+++AeIrdp+     +r++lg+f+tae+Aa+a++aa+  ++g+
  Phvul.007G193400.1 14 RYRGIRRRP-WGKFAAEIRDPTRK--GTRIWLGTFDTAEQAARAYDAAAFHFRGH 65
                        69*******.**********8542..4***********************99996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.36E-211473No hitNo description
PROSITE profilePS5103225.5011472IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-231473IPR016177DNA-binding domain
SMARTSM003807.4E-361478IPR001471AP2/ERF domain
PfamPF008479.7E-141465IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-321474IPR001471AP2/ERF domain
PRINTSPR003678.5E-121526IPR001471AP2/ERF domain
PRINTSPR003678.5E-123854IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MEGGRSSVSN VEVRYRGIRR RPWGKFAAEI RDPTRKGTRI WLGTFDTAEQ AARAYDAAAF  60
HFRGHRAILN FPNEYQSPDP NSSLPMPLTV PPSSSSSSSS SSSYSSYCMD NLAGPEMMQG  120
DDDIFELEFL DNKVLEELLQ ENRHLFK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-29175175Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G193400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-130AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007144905.11e-107hypothetical protein PHAVU_007G193400g
SwissprotQ9LTC56e-39ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLV7BG811e-105V7BG81_PHAVU; Uncharacterized protein
STRINGXP_007144905.11e-106(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.12e-30ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]