PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.007G190100.1 | ||||||||
Common Name | PHAVU_007G190100g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | G2-like | ||||||||
Protein Properties | Length: 472aa MW: 51967.5 Da PI: 5.3163 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 108 | 4.9e-34 | 257 | 311 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k r+rWtpeLHe+Fveav+qLGGse+AtPk +l+lmkv+gLt++hvkSHLQkYR+ Phvul.007G190100.1 257 KSRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRT 311 68****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.2E-18 | 254 | 311 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.523 | 254 | 314 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-31 | 256 | 313 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.3E-25 | 257 | 311 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.4E-10 | 259 | 310 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 8.0E-26 | 342 | 389 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 472 aa Download sequence Send to blast |
MEAHPTFSIE RSKQLNNMGM SGALSSSLSV LPIPSEDMYL RLPESQLDIV EQDLVTRPFT 60 HSSYLNSNGV VGHIFSSSPG YSTDLHHSSL SPDEKHSTNA HFISQSSTNI SQFPLSYSSN 120 TGPPNSATPS HFSKGNSASW HTGSLPNFLD FPAHDSIDDN RVESSACPIM ASEEYGKQND 180 WQEWAERLIS DDDTLTSNWD DLLTDNIQDI EPKVPFQVAK PLSQFPGHQC QGQQQLPASF 240 VDNCIGLSCS ANSTPAKSRM RWTPELHEAF VEAVNQLGGS ERATPKGVLK LMKVEGLTIY 300 HVKSHLQKYR TARYRPESSE GVTEKKGSSI EEMSSLDLKT GIEITEALRL QMEVQKRLHE 360 QLEIQRNLQL RIEEQGRYLQ MMFEKQCKSG TETLKASSST IETQSGVSSN ATRDFPVKSV 420 LEASQGPDQA NGSTPVEEGS LEKVGNPDSP KTQHAIASGD SAQAPKRQRT E* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 5e-33 | 256 | 315 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 5e-33 | 256 | 315 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 5e-33 | 256 | 315 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 5e-33 | 256 | 315 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 5e-33 | 256 | 315 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 5e-33 | 256 | 315 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 5e-33 | 256 | 315 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 5e-33 | 256 | 315 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.007G190100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007144858.1 | 0.0 | hypothetical protein PHAVU_007G190100g | ||||
Refseq | XP_007144859.1 | 0.0 | hypothetical protein PHAVU_007G190100g | ||||
TrEMBL | V7BG97 | 0.0 | V7BG97_PHAVU; Uncharacterized protein | ||||
STRING | XP_007144858.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1512 | 34 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28610.1 | 5e-97 | phosphate starvation response 1 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.007G190100.1 |
Entrez Gene | 18626360 |