PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G186700.1
Common NamePHAVU_007G186700g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family Trihelix
Protein Properties Length: 588aa    MW: 67151.8 Da    PI: 7.366
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G186700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix49.41.2e-1599173286
            trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         Wt++evlaL+++r+++e+++ +       We+vs+k++e g++rs+++Ckek+e+ ++++ +  +  k++     ++++++++le
  Phvul.007G186700.1  99 WTNDEVLALLRIRSSTESWFPEL-----TWEHVSRKLAELGYKRSAEKCKEKFEEESRYFNNNINYGKNN-----NNYRFLSELE 173
                         ********************987.....9*******************************8765555542.....3566666665 PP
2trihelix95.74.4e-30426515186
            trihelix   1 rWtkqevlaLiearremeerlrr.....gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         rW+k+evlaLi++r    +++++     g+ k plWe++s+ m+e g++rs+k+Ckekwen+nk+++k+k+ +kkr s +s+tcpyf+ql 
  Phvul.007G186700.1 426 RWPKDEVLALINLRCTSVSNSNTneekeGNNKVPLWERISQGMSELGYRRSAKRCKEKWENINKYFRKTKDVNKKR-SLDSRTCPYFHQLS 515
                         8*************9655555541122268*********************************************8.9999********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171395152IPR001005SANT/Myb domain
PfamPF138371.5E-1197175No hitNo description
PROSITE profilePS500906.29598150IPR017877Myb-like domain
SMARTSM007171.2423490IPR001005SANT/Myb domain
PfamPF138377.3E-20425516No hitNo description
CDDcd122031.34E-23425495No hitNo description
PROSITE profilePS500906.26426488IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0001158Molecular Functionenhancer sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 588 aa     Download sequence    Send to blast
MFDGVPEQFH QFITPRTSLP LHLPFPLHAS GTPNTFSSNF DPYSPSHQLP LQPNSLLHPL  60
HHPPSTHKDE AKAENTTIPM NFQIQRDQRQ QLPQLIDPWT NDEVLALLRI RSSTESWFPE  120
LTWEHVSRKL AELGYKRSAE KCKEKFEEES RYFNNNINYG KNNNNYRFLS ELEQLYHQGG  180
GDHLGTGQKT QQLQKQDKMD HHPLEEGDSG KVESSVTKQN HDAVVAKSQG RKRKRPGRFE  240
MFKGFCESIV HKMMAQQEEM HNKLLEDMMT RDEEKFTREE AWKKQEMEKM NKELEMMARE  300
QAIAGDRQTN IIQILNKFSL TSSSNKTLKV VTNGSNLKTH ITQNPNPSQN IPPIPTTQNP  360
TSTLAQDTLQ VITNPSTSST SAQAPQTNPS SSSLNSQNNI NPVERNSVLN KSLSSNVAEK  420
DDVGRRWPKD EVLALINLRC TSVSNSNTNE EKEGNNKVPL WERISQGMSE LGYRRSAKRC  480
KEKWENINKY FRKTKDVNKK RSLDSRTCPY FHQLSSLYNE GKLVLQSERP ESHMNNPPEN  540
LEQVEPDQTQ AESSSQVGSG GFSVQQQVDH GGEKTLMQVP SLDFDQF*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00011PBMTransfer from AT5G28300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G186700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007144820.10.0hypothetical protein PHAVU_007G186700g
TrEMBLV7BG150.0V7BG15_PHAVU; Uncharacterized protein
STRINGXP_007144820.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50433355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.15e-43Trihelix family protein