PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.007G185500.1 | ||||||||
Common Name | PHAVU_007G185500g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | GeBP | ||||||||
Protein Properties | Length: 359aa MW: 41002.8 Da PI: 5.1043 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 79.9 | 3.9e-25 | 111 | 208 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk...spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkif 89 + qrlw+++De+ lL+G +d+ +++g ++d+ +y+ v+ +++++++++qlveK+rrLK+K k +k ++ke+ + ++q if Phvul.007G185500.1 111 QYQRLWTKQDEMELLKGYLDYMKQHGRattTLHNDVASLYDHVRPKLNVDFNRNQLVEKLRRLKRKHKLALDK-GKDKEVPKGNLQEQAIF 200 579********************99986666788***************************************.5555666677889**** PP DUF573 90 elskkiWg 97 e+s+kiWg Phvul.007G185500.1 201 EISHKIWG 208 *******8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 3.0E-24 | 113 | 208 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MLSPLVSWFL SPSSSSSSSE EEQNLDINTH HENHQNFNIQ DHENDQYLSS CDVDDTIPLA 60 LAVPTASPAV TVAFPADDER SMVPGTTTTA TTFVTRSKGQ CSNKYSGVVR QYQRLWTKQD 120 EMELLKGYLD YMKQHGRATT TLHNDVASLY DHVRPKLNVD FNRNQLVEKL RRLKRKHKLA 180 LDKGKDKEVP KGNLQEQAIF EISHKIWGND TDNLLDQDSF DGASGRTPES RYLGGNVKVK 240 IDQLDNSDEI DERVPKRLRL HDAEDENRDY EQNNGGNIQG FIEETMRSCF SPLLKEVLDE 300 AHQQPPPELV PIPLPLCPED VDHAQWTKRG ILELEMYLKR LELLQDQIKA RLEELRSR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.007G185500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007144807.1 | 0.0 | hypothetical protein PHAVU_007G185500g | ||||
TrEMBL | V7BJP4 | 0.0 | V7BJP4_PHAVU; Uncharacterized protein | ||||
STRING | XP_007144807.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16305 | 7 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28040.1 | 7e-26 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Phvul.007G185500.1 |
Entrez Gene | 18626313 |