PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.007G181400.1 | ||||||||
Common Name | PHAVU_007G181400g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | NF-YC | ||||||||
Protein Properties | Length: 262aa MW: 29156.9 Da PI: 6.4313 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 176.4 | 2.8e-55 | 82 | 184 | 2 | 101 |
NF-YC 2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdif 89 l++fw++q iek+tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkr+tl+k+diaaa+trtdif Phvul.007G181400.1 82 LQAFWTNQyqeIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRKTLQKNDIAAAITRTDIF 172 89*****99999******************************************************************************* PP NF-YC 90 dflvdivprdel 101 dflvdivpr++ Phvul.007G181400.1 173 DFLVDIVPREDY 184 *********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.34E-33 | 68 | 175 | IPR009072 | Histone-fold |
Pfam | PF00808 | 5.8E-22 | 103 | 166 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.0E-37 | 104 | 181 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MDHQGHGHGQ NPSLGVVGSG PQLTYGSNPY QASHITASPG MVVASPGTIQ STGQPAATQL 60 GQHQLAYQHM HQQQQQQLQQ RLQAFWTNQY QEIEKVTDFK NHSLPLARIK KIMKADEDVR 120 MISAEAPVIF ARACEMFILE LTLRSWNHTE ENKRKTLQKN DIAAAITRTD IFDFLVDIVP 180 REDYKDEVLA SMPRGTVPVT GAPEALPYCY MPPQHAQVGT AAVMMGNNPV MDPYAQQSHQ 240 YSMAPQMWPQ PPEQQQSSPD Q* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 1e-61 | 89 | 181 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Interacts with REF6 to directly regulate SOC1 transcription in response to flowering signals from photoperiod and gibberellic acid pathways (PubMed:25105952). {ECO:0000250, ECO:0000269|PubMed:25105952}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.007G181400.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007144748.1 | 0.0 | hypothetical protein PHAVU_007G181400g | ||||
Swissprot | Q8L4B2 | 2e-81 | NFYC9_ARATH; Nuclear transcription factor Y subunit C-9 | ||||
TrEMBL | V7BG13 | 0.0 | V7BG13_PHAVU; Uncharacterized protein | ||||
STRING | XP_007144748.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1257 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08970.4 | 5e-81 | nuclear factor Y, subunit C9 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.007G181400.1 |
Entrez Gene | 18626271 |