PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.007G179500.1

Common Name

PHAVU_007G179500g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

MYB_related

Protein Properties

Length: 1113aa MW: 124779 Da PI: 9.1979

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.007G179500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.1	2.1e-08	46	82	3	41
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41 W++eE e +++a +++G++ Wk++a + +Rt +++ Phvul.007G179500.1 46 QWSKEELEGFYEAYRMYGKD-WKKVAGVVR-NRTTEMVE 82 6***************99.*****.*99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.64E-10	41	90	IPR009057	Homeodomain-like
PROSITE profile	PS51293	9.758	42	95	IPR017884	SANT domain
SMART	SM00717	0.0023	43	91	IPR001005	SANT/Myb domain
Pfam	PF00249	3.7E-7	46	86	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.7E-4	46	83	IPR009057	Homeodomain-like
CDD	cd00167	8.68E-5	47	81	No hit	No description
Pfam	PF06584	3.1E-30	627	727	IPR033471	DIRP domain
SMART	SM01135	2.6E-52	627	728	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1113 aa Download sequence Send to blast
MAPTRKSRSV SKRISNSSDV SPEKDGVNSN KNKHRKKKLT DKLGSQWSKE ELEGFYEAYR 60 MYGKDWKKVA GVVRNRTTEM VEALYNMNRA YLSLPEGTAS VVGLIAMMTD HYNVLEESDS 120 ERESSDALGP RKFIKRKREK VQLSVSKDQS HSIASSEGCL SLLKKRRLDG IVPHAVGKRT 180 PRVPVSYSYK KDYTENYVSP YRRSLKSTTD ANDDEVAHVV ALALTEAAQR GGSPQVSQSP 240 RRRVEQKPSP VQRWEKKHQV SETTRAKLHN LSVDEELLDG SIESRGADNR EYARDNSSLM 300 DMEGTGTVEV LQKGGKFYRK RERVKNVGNH QLDDGGEACS GTEEGLCFSS LKEMVDSEVT 360 NEKLEKISPK GGGKRNKKLF FGDETPALNA LQTLADLSLM MPISTIDSES SIQLKGDRIS 420 ADKDSKSALP EATSTSHKRH KLKRSVVPEI EVSTSKKSKL GKESAKDTNV LSESKEQLPF 480 VDATWKRKRK SMVPKVANAK LDTFPSGPLK DEALDDEKKP VAKGKHGDQV FILPKQLKTV 540 KSSESSLFSD QKDLTASMAE TPLLNEVSLP TKRSRRKMNL PRTSFAKEKS SDYILKSQPN 600 KHSAVKEKLS SCLSSDIVRR WFIFEWFYSA IDYPWFAKRE LMEYLNHVGL GNIPRLTRVE 660 WSVVRGSLGK PRRLSEHFLH DERQKLAEYR ESVRKHYAEL RTGIRDGLPT DLARPLCVGQ 720 RVIAVHPKTR EIHDGSVLTV DYDKCRIQFD RPELGVEFVM DIDCMPFNPL DNMPEALRHI 780 DDRKGSPIEP HVNGTSNFGG CENHSSPVKA MVATVDNFCA QAGCVQPCKV THHQAKEADI 840 HALSELKRAL DRKETLLMEL RSSNSDILEN QNGIECVNDS EVFKKHYAMV SDAMLQLRQR 900 NTYRGNSLPP WMKPQTSFNV HDDLPNMLDS SLTQELGSTV VQIIKGSRSR SHAMVDAAFK 960 ALSLTKEGED AFVKIGQALD SINHQQLASK SRLPLVRSQE QVTANGSFYN HNHSTCSVSE 1020 SILNDPSGAK LHNYSDKFDT ELPSDLITSC VATLIMIQTC TERQYPPADV AQILDSAVSS 1080 LHPCCPQNLP IYREIQMCMG RIKTQILALI PT*

Sequence ? help Back to Top

Protein Sequence Length: 1113 aa Download sequence Send to blast

MAPTRKSRSV SKRISNSSDV SPEKDGVNSN KNKHRKKKLT DKLGSQWSKE ELEGFYEAYR  60
MYGKDWKKVA GVVRNRTTEM VEALYNMNRA YLSLPEGTAS VVGLIAMMTD HYNVLEESDS  120
ERESSDALGP RKFIKRKREK VQLSVSKDQS HSIASSEGCL SLLKKRRLDG IVPHAVGKRT  180
PRVPVSYSYK KDYTENYVSP YRRSLKSTTD ANDDEVAHVV ALALTEAAQR GGSPQVSQSP  240
RRRVEQKPSP VQRWEKKHQV SETTRAKLHN LSVDEELLDG SIESRGADNR EYARDNSSLM  300
DMEGTGTVEV LQKGGKFYRK RERVKNVGNH QLDDGGEACS GTEEGLCFSS LKEMVDSEVT  360
NEKLEKISPK GGGKRNKKLF FGDETPALNA LQTLADLSLM MPISTIDSES SIQLKGDRIS  420
ADKDSKSALP EATSTSHKRH KLKRSVVPEI EVSTSKKSKL GKESAKDTNV LSESKEQLPF  480
VDATWKRKRK SMVPKVANAK LDTFPSGPLK DEALDDEKKP VAKGKHGDQV FILPKQLKTV  540
KSSESSLFSD QKDLTASMAE TPLLNEVSLP TKRSRRKMNL PRTSFAKEKS SDYILKSQPN  600
KHSAVKEKLS SCLSSDIVRR WFIFEWFYSA IDYPWFAKRE LMEYLNHVGL GNIPRLTRVE  660
WSVVRGSLGK PRRLSEHFLH DERQKLAEYR ESVRKHYAEL RTGIRDGLPT DLARPLCVGQ  720
RVIAVHPKTR EIHDGSVLTV DYDKCRIQFD RPELGVEFVM DIDCMPFNPL DNMPEALRHI  780
DDRKGSPIEP HVNGTSNFGG CENHSSPVKA MVATVDNFCA QAGCVQPCKV THHQAKEADI  840
HALSELKRAL DRKETLLMEL RSSNSDILEN QNGIECVNDS EVFKKHYAMV SDAMLQLRQR  900
NTYRGNSLPP WMKPQTSFNV HDDLPNMLDS SLTQELGSTV VQIIKGSRSR SHAMVDAAFK  960
ALSLTKEGED AFVKIGQALD SINHQQLASK SRLPLVRSQE QVTANGSFYN HNHSTCSVSE  1020
SILNDPSGAK LHNYSDKFDT ELPSDLITSC VATLIMIQTC TERQYPPADV AQILDSAVSS  1080
LHPCCPQNLP IYREIQMCMG RIKTQILALI PT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	570	577	TKRSRRKM

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.007G179500.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	1e-149	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007144725.1	0.0	hypothetical protein PHAVU_007G179500g
TrEMBL	V7BFR9	0.0	V7BFR9_PHAVU; Uncharacterized protein
STRING	XP_007144725.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1783	33	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding

Link Out ? help Back to Top
Phytozome	Phvul.007G179500.1
Entrez Gene	18626252